Sequence
atgc intronic sequence ATGC exonic sequenceCTGCAAAGGGTGGAAATGAACAAGGTGGAACTCGAATTTTTGGCCCTTCCCAGAAGTACTCTTCAAGAGACATTGCATCTCACACAACTCTAAAGCCCAGgtagtagtttgccaaattctggttgttatgtacatgtttaattgtgtactgtagtgaacctacacatgctcaaggatgtcttggaatatcattgaaatgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g00980.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G04620.1 (Glycine max), 5'ss of exon 1
CTGCAAAGGGTGGAAATGAACAAGGTGGAACTCGAATTTTTGGCCCTTCCCAGAAGTACTCTTCAAGAGACATTGCATCTCACACAACTCTAAAGCCCAGgtagtagtttgccaaattctggttgttatgtacatgtttaattgt-gtactgtagtgaacctacacatgctcaaggatgtcttggaatatcattgaaatgg--
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CTGCTAAAGGTGGCAATGAACAAGGCGGTACTCGAATTTTCGGTCCCTCACAAAAGTACTCTTCTAGGGACATCGCATCGCACACCACTCTCAAGCCCAGgtatgattcttttttctcctaatccttttccccaattttgtttttcatattttgctttggttggaaga---caagctaggtttaggttttcttacgaatggaa
upper sequence: Vv19s0015g00980.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA17G15050.2 (Glycine max), 5'ss of exon 1
CTGCAAAGGGTGGAAATGAACAAGGTGGAACTCGAATTTTTGGCCCTTCCCAGAAGTACTCTTCAAGAGACATTGCATCTCACACAACTCTAAAGCCCAGgtagtagtttgccaaattc-tggt-tgttatgtacatgtttaattgtgtactgtagtgaacctacacatgctcaa-ggatgtcttggaatatcattgaaatgg
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CTGCTAAAGGTGGCAACGAACAAGGTGGTACTCGAATTTTCGGTCCCTCACAAAAGTACTCTTCTAGGGACATCGCATCGCACACCACTCTCAAGCCCAGgtatgattcttttttcttcgtaatcttttttttcccagtttttttttttcatattttgctttttggctggaagactagctgggtttaggttttcttacga---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110366424|gb|EC930330.1|EC930330EST: CAGAAGTACTCTTCAAGAGACATTGCATCTCACACAACTCTAAAGCCCAG AAAGGAAGGGCAAGACACAGCAGAGGAATTGCAGAAGAGGAACCTCCGTGA
genomic: CAGAAGTACTCTTCAAGAGACATTGCATCTCACACAACTCTAAAGCCCAGgtagtagttt ... atctctacagAAAGGAAGGGCAAGACACAGCAGAGGAATTGCAGAAGAGGAACCTCCGTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGCAAAGGGTGGAAATGAACAAGGTGGAACTCGAATTTTTGGCCCTTCCCAGAAGTACTCTTCAAGAGACATTGCATCTCACACAACTCTAAAGCCCAGgtagtagtttgccaaattctggttgttatgtacatgtttaattgtgtactgtagtgaacctacacatgctcaaggatgtcttggaatatcattgaaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa