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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttctgcttttcagattctcaaatcccccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg...

Basic information

species Vitis vinifera
transcript Vv18s0001g02970.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os04g59550.1 (Oryza sativa), 5'ss of exon 2
TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttctgcttttcagattctcaaatcccccctctttcggcttttgtcgaatggatttc--atttccttaattttgttttattctgtttctggatgtg-
        |   |  | ||    |  |  | ||||| |||||||| || |||||||| ||||| |||||||| || ||||| |||||||||||||| |||||     ||     | ||   | |    ||||| || ||| |  | ||| ||     ||||    ||| | ||        || | |   | ||  |      
CACCGGCGGTGGGCTGGGCAACCTGCGCGCGCTGCTGGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtccagatttcctctctc---tccctggatccctccccttccttcctttctctctccgattcaagattccattctcccctcttcaatggatatcctgccaaac

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os08g01410.1 (Oryza sativa), 5'ss of exon 1
TCTTCTTTGCCAGTGGAGC-GCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttctgcttttcagattctcaaatcccccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgt-ttctggatgtg---
 |    | |     |  ||  |  |  || |  | || || ||||| ||||||||||| ||||| |||||||| || ||||||||||| |||||||| ||||||    ||||    | || | |||      ||   |||| |  |      |       | |  || | ||| ||   |||| || | | | || ||  ||   
-CAAGATGGGAGACGTTGCCACCATCCGAGCCGTTCTGGCGATCCTCCAATGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAATGGATCTTCCAGgttccaattct----tccataatcttcctctccttttcttcccccccccccccccctattcttcttccgttacttcctttttcttttctgtccttgagatgatc

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G127591_T03 (Zea mays), 5'ss of exon 1
TCTTCTTTGCCAGTG-GAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc--tgcttttcagattctcaaatc-ccccctctttcggcttt---tgtcgaatggatttcatttcc-----ttaattttgttttattctgtttctggatgtg--------------------------
        ||| |   | || |  |  |  |  |||| |||||||| || |||||||| ||||| |||||||| || |||||||||||||||||||| ||||||| |   |  |   ||  || ||| | |  |  |  |     ||| | |   ||||  |||  | || |  ||      || |||| |  | |    | |||   |                             
-GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctcctgcccggctgctacttttctcctttggaatatctaactaaattcgtccatactgcttaccattatag

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G127591_T01 (Zea mays), 5'ss of exon 1
TCTTCTTTGCCAGTG-GAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc--tgcttttcagattctcaaatc-ccccctctttcggcttt---tgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg
        ||| |   | || |  |  |  |  |||| |||||||| || |||||||| ||||| |||||||| || |||||||||||||||||||| ||||||| |   |  |   ||  || ||| | |  |  |  |     ||| | |   ||||  |||  | ||  | ||    |  |  |||  |||  ||  | ||   
-GGCGCCGGCCGGCCTGGGCACCCTGCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGCTTCAACGTCACCGTCATCATCATGAACAAGTGGATCTTCCAGgtttacccgcattatattctagcttccccatccatcttccgccgcggatctggatgtcagatgcttctc-ctgcccggctgctacttt--tctcctttggaat---

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G040033_T01 (Zea mays), 5'ss of exon 1
TCTTCTTTGCCAGTGGAGC-GCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgttt-gctttctgcttttcagattctcaaatcccccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg---
 |    | |  |  || ||  |  |  |  |  |||| |||||||| || |||||||| ||||| |||||||| || ||||| |||||||||||||| |||||   |      ||  ||    || |  ||  ||   ||||    ||||| | |  |  |||  ||||||  |  |     |   | |  || |  || |    
-CAAGATGGGGAACGGCGCCACCATCCGCGCGGTGCTCGCCATCCTCCAGTGGTGGGGATTCAACGTCACCGTCATCATCATCAACAAGTGGATCTTCCAGgtcccgtccctcgcgcttgctcttgtttaaatcctggtctt----ctttttttgtttcaattcaatttccagagatggccatgtatgtagttatatatatattc

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA14G23570.1 (Glycine max), 5'ss of exon 1
TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttctgcttttcagattctcaaatcccccctctttcggcttttgtcg-aatggatttcatttccttaatt--ttgttttattctgtttctggatgtg
  || ||||||||||||||| ||||||||||||  | || |||||||| |||||||  ||||||||||| || |||||||| |||||||||||||| ||||||| || |||   | ||    | ||    |||   ||||       || |   |||   |  || ||  || |||  || ||| |      |||   ||   
GGTTATTTGCCAGTGGAGCGTGTTTAGATCTCTCTTGGCTATCCTTCAGTGGTGGGCTTTCAATGTCACTGTCATTATCATCAACAAGTGGATCTTCCAGgttt-ctctctctctctcgttatttctttacccaattcttgttataattataataattattcacactttttttattgcttctttcaaatcccttcacaatt--

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G03210.1 (Glycine max), 5'ss of exon 1
TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttctgcttttcagattctcaaatccc----ccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg
  || ||||||| ||||||| ||||||||||||  | || || |||||||||||||  ||||||||||| || |||||||| |||||||||||||| ||||||| || | || | ||    | | ||| ||         |  |||    ||| |         ||| |  |||    ||||||  |   |  |||   ||   
GGTTATTTGCCAATGGAGCGTGTTTAGATCTCTCTTGGCAATACTTCAATGGTGGGCTTTCAATGTCACTGTCATTATCATCAACAAGTGGATCTTCCAGgttt-ctctttgttatttctttacccaattcttataataattattcacacttttttatggtttcttcctcccctcttgtttgttccaaattccttcataat---

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA06G11850.1 (Glycine max), 5'ss of exon 1
TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttctgcttttcagattctcaaa-tcccccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg--
  |  ||| |||||||||||   | ||||||||  |  |||||||||| ||||||| ||||||||||||||| || ||| | |||||||||||||| ||||||    || |   ||||   |||||    ||| || ||| |   |  ||    |||      || |||     ||||||||| |  | |  |  ||| ||  
CTTCGTTTTCCAGTGGAGCGTCATCAGATCTCTCTTGTCCATCCTTCAGTGGTGGGCGTTCAATGTCACCGTCATCATCGTCAACAAGTGGATCTTCCAGgttcctgttttctctttctccttctcctcctcctccttctattttcaatttcgaaataatcaccaattcgcc--ttttgttttctaat-tcgcgagatttgtt

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G42900.2 (Glycine max), 5'ss of exon 1
TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttctgcttttcagattctcaaatcccccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg-
  |  ||| |||||||||||   | ||||||||  |  |||||||||| |||||||  ||||||||||| || || ||| | |||||||||||||||||||||     | |    |||   |||    ||   |  | |     |  |   | | | | ||    |    | ||| |     ||| | ||||||  |  | 
CTTCGTTTTCCAGTGGAGCGTTATCAGATCTCTCTTGTCCATCCTTCAGTGGTGGGCCTTCAATGTCACTGTCATCATCGTCAACAAGTGGATCTTTCAGgttcctgctatctccttcttcttcatctattttcaatttccaaacactcaccaattcgcttcttgtcttctgattct-cgagattttttttctgtttacgt

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G77610.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttctgcttttcagattctcaaatcccccctctttcggcttt-tgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg--------------------------------------------------------
  |  |     |  | ||   ||| ||||||||  | || || ||||| |||||||| |||||||| ||||| || ||||||||||| |||||||||||||||| |||  |     |   ||| | |  |    | |  ||    ||  |  |   | ||| | || |  || || |  | ||   ||| ||  | || ||                                                        
AATCATGGAGGAAGGAAGTATGTTCAGATCTCTATTAGCGATTCTTCAGTGGTGGGGTTTCAATGTTACCGTCATCATCATGAACAAATGGATCTTTCAGgttt-cttcttaaccctagaatttttaggttttacttaattgtatttaatacccttttgatctgatcta-ttgatctgatgttg--ctgatttggaatttggtttcagctttatagattggtgataaagttttgatttttttttgttgttgttgcag

upper sequence: Vv18s0001g02970.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT1G21870.1 (Arabidopsis thaliana), 5'ss of exon 1
TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctt--tctgcttttcagattctcaaatcccccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg
|||     | || ||||    ||| ||||||||| |  | || |||||||||||||| || || || || || || ||||||||||| ||||||||||||||||      |||  |  |   ||  | |||  |     ||||||   |||||   ||    |     |    ||||| ||    |||  | | || |    
TCTGTGGCGTCAATGGACTATGTTCAGATCTCTGTTATCGATTCTTCAATGGTGGGGTTTTAACGTTACTGTTATCATCATGAACAAATGGATCTTTCAGgtttaaaaagtctcttacttttatcattaaagacttagcctttcg---tttgttttatctgatctgcgtttgaaatttggtacctttccttgtttgcag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351044447|gb|FQ442978.1|FQ442978
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349821533|gb|FQ408092.1|FQ408092
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349808343|gb|FQ405487.1|FQ405487
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|352790597|gb|FQ478236.1|FQ478236
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349822437|gb|FQ412701.1|FQ412701
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351048641|gb|FQ448915.1|FQ448915
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349809118|gb|FQ398915.1|FQ398915
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCCTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351014131|gb|FQ434720.1|FQ434720
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349814583|gb|FQ399223.1|FQ399223
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351035689|gb|FQ463534.1|FQ463534
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349814841|gb|FQ410064.1|FQ410064
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349813851|gb|FQ414085.1|FQ414085
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349824776|gb|FQ414634.1|FQ414634
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCCCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349820252|gb|FQ406928.1|FQ406928
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349821022|gb|FQ404275.1|FQ404275
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351031988|gb|FQ460245.1|FQ460245
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349815034|gb|FQ410257.1|FQ410257
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349819066|gb|FQ411761.1|FQ411761
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351044732|gb|FQ448986.1|FQ448986
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351027605|gb|FQ446769.1|FQ446769
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351035083|gb|FQ458440.1|FQ458440
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349814967|gb|FQ410190.1|FQ410190
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351038213|gb|FQ460905.1|FQ460905
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349822839|gb|FQ398226.1|FQ398226
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349808296|gb|FQ403483.1|FQ403483
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349825076|gb|FQ415623.1|FQ415623
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349817210|gb|FQ405215.1|FQ405215
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351044612|gb|FQ443143.1|FQ443143
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349808832|gb|FQ406682.1|FQ406682
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAA                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|110713836|gb|EE090104.1|EE090104
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351048025|gb|FQ441197.1|FQ441197
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|352790492|gb|FQ478132.1|FQ478132
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349814053|gb|FQ414311.1|FQ414311
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349819896|gb|FQ404618.1|FQ404618
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349818919|gb|FQ411614.1|FQ411614
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349825077|gb|FQ415624.1|FQ415624
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349819666|gb|FQ402603.1|FQ402603
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351023618|gb|FQ447172.1|FQ447172
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|71859867|gb|DT008922.1|DT008922
EST:     GGTGGGGGTTCCATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATT
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATT
EST: gi|349823004|gb|FQ399983.1|FQ399983
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349811250|gb|FQ406238.1|FQ406238
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351052146|gb|FQ450716.1|FQ450716
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351027631|gb|FQ446795.1|FQ446795
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349820607|gb|FQ404102.1|FQ404102
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351035725|gb|FQ463570.1|FQ463570
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351049315|gb|FQ429058.1|FQ429058
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349809911|gb|FQ398536.1|FQ398536
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|349823007|gb|FQ399986.1|FQ399986
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
EST: gi|351035168|gb|FQ458525.1|FQ458525
EST:     GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAG                         AAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC
genomic: GGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttc ... tcttgtgcagAAACTGGATTTCAAATTTCCTCTGTCAGTGTCATGTATTCACTTCATATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCTTTGCCAGTGGAGCGCGTTTAGATCTCTGCTTGCCATCCTTCAATGGTGGGGGTTCAATGTCACCGTGATTATCATGAACAAGTGGATCTTTCAGgtttgctttctgcttttcagattctcaaatcccccctctttcggcttttgtcgaatggatttcatttccttaattttgttttattctgtttctggatgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccccc