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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCTTCCAAGAAATCCACTAAGATACAGCCTACCCATGTCGCCACTTTAGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAGgtataatcttttttcttttttcccctctttttgtatttcttcttcatacatgcaattttatatttgattttctcattatttttaattttatggaatttat...

Basic information

species Vitis vinifera
transcript Vv16s0039g00730.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110705253|gb|EE081923.1|EE081923
EST:     AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATGATCTCCAAG                         ATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
genomic: AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAGgtataatctt ... ttggttgcagATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
EST: gi|351031305|gb|FQ445330.1|FQ445330
EST:     AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAG                         ATGATGAATATGATGGGAATGAGACTGTGTTGAGGCAGTTTGACATGAACA
genomic: AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAGgtataatctt ... ttggttgcagATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
EST: gi|110415366|gb|EC981269.1|EC981269
EST:     AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAG                         ATGATGAATATGATGGGAATGAGACTGTGTTGAGGCAGTTTGACATGAACA
genomic: AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAGgtataatctt ... ttggttgcagATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
EST: gi|110365758|gb|EC929187.1|EC929187
EST:     AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAG                         ATGATGAATATGATGGGAATGAGACTGTGTTGAGGCAGTTTGACATGAACA
genomic: AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAGgtataatctt ... ttggttgcagATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
EST: gi|110706622|gb|EE082307.1|EE082307
EST:     AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATGATCTCCAAG                         ATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
genomic: AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAGgtataatctt ... ttggttgcagATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
EST: gi|110707557|gb|EE084094.1|EE084094
EST:     AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATGATCTCCAAG                         ATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
genomic: AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAGgtataatctt ... ttggttgcagATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
EST: gi|30138007|gb|CB923345.1|CB923345
EST:     AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAG                         ATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA
genomic: AGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAGgtataatctt ... ttggttgcagATGATGAATATGATGGGAATGAGACGGTGTTGAGGCAGTTTGACATGAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGCCTTCCAAGAAATCCACTAAGATACAGCCTACCCATGTCGCCACTTTAGGCTCTGATGTGGTCCAACCTTCAACCCTCTCAGCCCATAATCTCCAAGgtataatcttttttcttttttcccctctttttgtatttcttcttcatacatgcaattttatatttgattttctcattatttttaattttatggaatttat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccctc