1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCCCTACTGGTTCAATCGTGATCGCTTTGTTCTCTCTGCCGGACATGGATGCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcatttccttaactttctttgggagcttgctctgtatgtgttcggatctttatgtggttttgccaaagtacgaatcaaaaatggatctctgttt...
species | Vitis vinifera |
transcript | Vv15s0048g00370.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCATGCTTCAGTATGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCACEST: gi|351013311|gb|FQ425016.1|FQ425016
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
EST: GCATGCTTCAGTATGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCACEST: gi|161705830|gb|FC057107.1|FC057107
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
EST: GCATGCTTCAGTATGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCACEST: gi|71860244|gb|DT009299.1|DT009299
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
EST: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAEST: gi|110689389|gb|EE065571.1|EE065571
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGA
EST: GCATGCTTCAGTATGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCACEST: gi|110687702|gb|EE065414.1|EE065414
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
EST: GCATGCTTCAGTATGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCACEST: gi|110700650|gb|EE077489.1|EE077489
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
EST: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCACEST: gi|110686000|gb|EE063214.1|EE063214
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
EST: GCATGCTTCAGTATGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCACEST: gi|71863785|gb|DT012840.1|DT012840
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
EST: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGEST: gi|77579456|gb|DV218569.1|DV218569
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTG
EST: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCACEST: gi|161713434|gb|FC063712.1|FC063712
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
EST: GCATGCTTCAGTATGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCACEST: gi|34548489|gb|CF516721.1|CF516721
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
EST: GCATGCTTCAGTATGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGG GAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
genomic: GCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcat ... gaattaatagGAAGAAGACTTGAAAAGTTTCCGTCAATGGGGAAGCACAACACCTGGTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCCTACTGGTTCAATCGTGATCGCTTTGTTCTCTCTGCCGGACATGGATGCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcatttccttaactttctttgggagcttgctctgtatgtgttcggatctttatgtggttttgccaaagtacgaatcaaaaatggatctctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaatg