Sequence
atgc intronic sequence ATGC exonic sequenceAACTGGGAATGTTAAACTACCCTAGAGCCAATGCACCTGCTCAGTCTCTCCTTTTTGCTGGCATGGAGCGTTATGCCCTTCTTGAATGGCTCTTTTTCCGgtatcttccccccctttctcaattatgtcttgtctatttgttcttatatttggttctagatttcttcatttttcagcttcagctatgctccgattggtta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA03G07390.1 (Glycine max), 5'ss of exon 2
AACTGGGAATGTTAAACTACCCTAGAGCCAATGCACCTGCTCAGTCTCTCCTTTTTGCTGGCATGGAGCGTTATGCCCTTCTTGAATGGCTCTTTTTCCGgtatcttccccccctttctcaattatgtcttgtctatttgttcttatatttggttctagatttcttcatttttcagcttcagctatgctccgattggtta
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AATTGGCTGACCTTAATTACCCAAGAGCGAATGCCCCTGCACAGTCCCTCCTATTTGCTGGCATGGAGCGCTATGCCCTTCTAGAGTGGCTCTTCTTTCGgtatcttgtttttctttgtctcttgaagtccatttatctgtttggaatttgaggaagttattctgccggaaaacaagataatggaaactggaattgctag
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA03G07310.1 (Glycine max), 5'ss of exon 1
AACTGGGAATGTTAAACTACCCTAGAGCCAATGCACCTGCTCAGTCTCTCCTTTTTGCTGGCATGGAGCGTTATGCCCTTCTTGAATGGCTCTTTTTCCGgtatcttccccccctttctcaattatgtcttgtctatttgttcttatatttggttctagatttct-tcatttttcagcttcagctatgctccgattggtta
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AATTGGCTGACCTTAATTACCCGAGAGCGAATGCCCCTGCACAGTCCCTCCTATTTGCTGGCATGGAGCGCTATGCCCTTCTAGAGTGGCTCTTCTTTCGgtatcttgtttttctttgtctcttgaagtccatttatctgtttgga-atttgaggaagtttttctgccggaaaacaagataatggaaactggaattgctag
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G29280.1 (Glycine max), 5'ss of exon 2
AACTGGGAATGTTAAACTACCCTAGAGCCAATGCACCTGCTCAGTCTCTCCTTTTTGCTGGCATGGAGCGTTATGCCCTTCTTGAATGGCTCTTTTTCCGgtatcttccccccctttctcaattatgtcttgtctatttgttcttatatttggttctagatttcttcatttttcagcttcagctatg----ctccgattggtta
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AATTGGCTGACCTAAATTACCCGAGAGCGAATGCGCCTGCACAGTCCCTCCTATTTGCTGGCATGGAGCGCTATGCCCTTCTAGAGTGGCTTTTCTTTCGgtatcttgtttttctttgtctctagaagtctgtttatctgtt-tggtatttgagc---aagtttttcttttggaaaataagataatggaaactggaattgctag
upper sequence: Vv15s0024g01470.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT5G17620.1 (Arabidopsis thaliana), 5'ss of exon 1
AACTGGGAATGTTAAACTACCCTAGAGCCAATGCACCTGCTCAGTCTCTCCTTTTTGCTGGCATGGAGCGTTATGCCCTTCTTGAATGGCTCTTTTTCCGgtatct---tccccccctttctcaattatgtcttgtctatttgttcttatatttg------gttctagatttcttcatttttcagcttcagc-tatgctccgattggtta-------------------------------------------------------------------------
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AGCTACGGCTGCTAAGTTACCCTAGGGCAAATGCTCCAGCTCAGTCTCTCCTCTTCGCCGGGATGGAACGTTATGCTCTTCTCGAATGGCTCTTTTTCAAgtaactctttcttcctctccttcttttatagcttattcgatt-ctcttctaccagaaaaatgctgggaattctctgaattttgaatatcaatgtgaactctcaacattttgaatttctcgagctctgatcacaaaattcgatggggtttacttattgtttcttctctggctctgtctttgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110373786|gb|EC938134.1|EC938134EST: CTTTTTGCTGGCATGGAGCGTTATGCCCTTCTTGAATGGCTCTTTTTCCG GCTCTTGGGTGATAAATCACCCTTCTCTCAACAAAATCTGCAAGGGGAAAA
genomic: CTTTTTGCTGGCATGGAGCGTTATGCCCTTCTTGAATGGCTCTTTTTCCGgtatcttccc ... ttaactatagGCTCTTGGGTGATAAATCACCCTTCTCTCAACAAAATCTGCAAGGGGAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACTGGGAATGTTAAACTACCCTAGAGCCAATGCACCTGCTCAGTCTCTCCTTTTTGCTGGCATGGAGCGTTATGCCCTTCTTGAATGGCTCTTTTTCCGgtatcttccccccctttctcaattatgtcttgtctatttgttcttatatttggttctagatttcttcatttttcagcttcagctatgctccgattggtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc