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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGGTCGGGATTCCAGAGGGCAAAGGCTTGGCGTCAAGATTTACGGCGATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaattattgtgaatgaatcatgactactcaaattagaggttcaattcgttttcagaaggtaatctttgtttccattttctaggttttgctttgttt...

Basic information

species Vitis vinifera
transcript Vv14s0068g01950.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01950.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g69950.1 (Oryza sativa), 5'ss of exon 1
GAACGGTCGGGATTCCAGAGGGCAAAGGCTTGGCGTCAAGATTTACGGCGATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaattattgtgaatgaatcatgactactcaaattagaggttcaattcgttttcagaaggtaatctttgtttccattttctaggttttgctttgttt-----
||||||  |||| |||   |||||  | || || ||||||||||||||||| |||||||| ||||||||||| |||||| |||| ||||| || |||| |||    |  ||  |       |  | |||  |    || || |||  ||  || |||      |   ||    ||     |  ||| | | |||| ||       
GAACGGGAGGGACTCCCCCGGGCAGCGCCTCGGTGTCAAGATTTACGGCGACCAGGTCGCCAAGCCCGGCGCCATCATCATCCGCCAGCGCGGCACCAGGgtcatcaccatcctcttcctttacttactggttc--ttggatgtttcat--gtgttcgacttttctcctcaaattttgactgatag-tatagcttcgtccagctc

upper sequence: Vv14s0068g01950.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA04G28020.1 (Glycine max), 5'ss of exon 1
GAACGGTCGGGATTCCAGAGGGCAAAGGCTT-GGCGTCAAGATTTACGGCGATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgta--tgaattattgtgaatgaatcatgactactcaaattagaggttcaattcgttttcagaaggtaatctttgtttccattttctaggttttgctttgttt
|||||| || || ||   |||||||  || | || ||||||||||||||||| |||||||| ||||||||| | |||||||| || ||||| || ||||||||   |   |  || |        | |     ||    ||  |  ||      || |||  || ||  | ||    | ||  |  |   ||    || ||  
GAACGGCCGCGACTC-GCAGGGCAAGCGCCTAGGAGTCAAGATTTACGGCGACCAGGTCGCCAAGCCCGGCTCCATCATCGTTCGCCAGCGCGGAACCAAGgtgcctccctccttctctccctcccttactctcttctctttcactttttccgagtattcgaaacgtgttgttctgattcacgtctttttttaatgttagt--

upper sequence: Vv14s0068g01950.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA11G21150.1 (Glycine max), 5'ss of exon 1
GAACGGTCGGGATTCCAGAGGGCAAAGGCTTGGCGTCAAGATTTACGGCGATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaattattgtgaatgaatcatgactactcaaat-tagaggttcaattcgttttcagaaggtaatctttgtttccattttctaggttttgctttgttt---
|||||| || || ||    ||  |  | || || |||||||| |||||||| |||||||| ||||||||| | ||||||||||| ||||| || ||||||||           |   | | ||     | || |||| |   | || |||||   ||       |  ||||| |   ||  |  ||| | ||  ||| | |   
GAACGGCCGCGACTCGCAGGGCAAGCGTCTCGGAGTCAAGATATACGGCGACCAGGTCGCCAAGCCCGGCTCCATCATCGTCCGCCAGCGCGGAACCAAGgtgcctccctccctcccttactc-cattttcttaaatgtgttgttttaattctcgtttttt---ttttctttatcggcaaatgttagttcttaatttttgttaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27584670|gb|CB007365.1|CB007365
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|351041165|gb|FQ444142.1|FQ444142
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|351033915|gb|FQ462970.1|FQ462970
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|351038980|gb|FQ457655.1|FQ457655
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|351049248|gb|FQ428991.1|FQ428991
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110375488|gb|EC940477.1|EC940477
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|351040811|gb|FQ438355.1|FQ438355
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110388116|gb|EC952834.1|EC952834
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110370744|gb|EC932829.1|EC932829
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110385398|gb|EC949919.1|EC949919
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|349809980|gb|FQ398605.1|FQ398605
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|22008820|gb|BQ793854.1|BQ793854
EST:     GCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: GCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110379132|gb|EC944308.1|EC944308
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110693422|gb|EE069638.1|EE069638
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110383557|gb|EC947936.1|EC947936
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110362243|gb|EC925763.1|EC925763
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCTTCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|349829457|gb|FQ419989.1|FQ419989
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|37186612|gb|CF605965.1|CF605965
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|349829513|gb|FQ420045.1|FQ420045
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110385535|gb|EC950068.1|EC950068
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110380099|gb|EC945341.1|EC945341
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110686359|gb|EE063903.1|EE063903
EST:     GTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: GTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110381278|gb|EC946602.1|EC946602
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|32246221|gb|CD712040.1|CD712040
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|27755356|gb|CB036111.1|CB036111
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|351027061|gb|FQ439922.1|FQ439922
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|77589291|gb|DV223910.1|DV223910
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|349829940|gb|FQ422253.1|FQ422253
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|349821016|gb|FQ404269.1|FQ404269
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|28962595|gb|CB341628.1|CB341628
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCAGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|30134966|gb|CB920304.1|CB920304
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|349808333|gb|FQ405477.1|FQ405477
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110381200|gb|EC946521.1|EC946521
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|37186033|gb|CF605386.1|CF605386
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|71885460|gb|DT034515.1|DT034515
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110376002|gb|EC941038.1|EC941038
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110381688|gb|EC935129.1|EC935129
EST:     ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC
EST: gi|110417269|gb|EC983310.1|EC983310
EST:     ATCAGGTCGCGAAGCCAGGCGCAATCATCGTCCGGCAGCGAGGTACCAAG                         TTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGANNNNNNNATCTTTTCC
genomic: ATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaatta ... ggcgtttcagTTCCACCCAGGGAAGAATGTGGGGCTGGGCAAGGACCACACCATCTTTTCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACGGTCGGGATTCCAGAGGGCAAAGGCTTGGCGTCAAGATTTACGGCGATCAGGTCGCGAAGCCCGGCGCAATCATCGTCCGGCAGCGAGGTACCAAGgtatgaattattgtgaatgaatcatgactactcaaattagaggttcaattcgttttcagaaggtaatctttgtttccattttctaggttttgctttgttt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggtaa