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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAACCACCTACTTCAGCTATGGCTTACTCTTCGTCTTCGGCCAAATCAGGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtttcttctacttgtattttgttatggcttttcttgtgtctgcgtctgcgtgcgtagttaattcttcacacttaattgttgctttttccatgctaaagcag

Basic information

species Vitis vinifera
transcript Vv14s0068g01300.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA02G07250.1 (Glycine max), 5'ss of exon 1
TTTAACCACCTACTTCAGCTATGGCTTACTCTTCGTCTTCGGCCAAATCAGGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctc---ttgtttcttctacttgtattttgttatggcttttcttgtgtctgcgtctgcgtgcgtagttaattcttcacacttaattgttgctttttccatgctaaagcag
 |||||||||||||||||||| ||||| ||||||| |||||||||  |||||||  ||||||||||||| || |||||||   || ||||||||||||||||  |     | || | |   ||| || || | ||   | |  || |        |  || |   | ||  |||||||                                 
CTTAACCACCTACTTCAGCTACGGCTTGCTCTTCGCCTTCGGCCAGTTCAGGGATTTCTTCCGCAAAATCTTCGACTGGTGCAGCGCCAACAATCTTCAGgttccaacaagattttacattttgcatattatgata-ttatatttataataataacaacgcgttgatttgtttcttcag--------------------------------

upper sequence: Vv14s0068g01300.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G26210.1 (Glycine max), 5'ss of exon 1
TTTAACCACCTACTTCAGCTATGGCTTACTCTTCGTCTTCGGCCAAATCAGGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtttcttctacttgtattttgttatggcttttcttgtgtctgcgtctgcgtgcgtagttaattcttcacacttaattgttgctttttccatgctaaagcag
 |||||||||||||||||||| || || ||||||| ||| |||||  |||||||  ||||||| ||||| || |||||||   || |||||| ||| |||||  |  |    || |||    |||||    |   | || |  ||        |       || | |   |  | |  | | ||||| ||                  
CTTAACCACCTACTTCAGCTACGGGTTGCTCTTCGCCTTTGGCCAGTTCAGGGATTTCTTCCGGAAAATCTTCGACTGGTGCAGCGCCAACACTCTCCAGgttccaagaagattttac----attttacatttaatcttataatgataataattattataataataacaacaacgcgttgatttgtttctcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352778118|gb|FQ467171.1|FQ467171
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349823630|gb|FQ415040.1|FQ415040
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349832894|gb|FQ423016.1|FQ423016
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351033557|gb|FQ447716.1|FQ447716
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351041981|gb|FQ456191.1|FQ456191
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351054108|gb|FQ450190.1|FQ450190
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|352773004|gb|FQ470619.1|FQ470619
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351046320|gb|FQ448625.1|FQ448625
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351054020|gb|FQ441786.1|FQ441786
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349808540|gb|FQ405684.1|FQ405684
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349807664|gb|FQ402055.1|FQ402055
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACACCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349820492|gb|FQ408442.1|FQ408442
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349822627|gb|FQ412891.1|FQ412891
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCAA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351015401|gb|FQ447230.1|FQ447230
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349819861|gb|FQ404535.1|FQ404535
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCCCCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349819166|gb|FQ412060.1|FQ412060
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349820920|gb|FQ408628.1|FQ408628
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351056259|gb|FQ453721.1|FQ453721
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|352782149|gb|FQ470051.1|FQ470051
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351037559|gb|FQ462542.1|FQ462542
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349813001|gb|FQ411241.1|FQ411241
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351021667|gb|FQ437052.1|FQ437052
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349822644|gb|FQ412908.1|FQ412908
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|352789617|gb|FQ476215.1|FQ476215
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351032559|gb|FQ458924.1|FQ458924
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|352772806|gb|FQ473844.1|FQ473844
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349808891|gb|FQ406741.1|FQ406741
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351032958|gb|FQ461847.1|FQ461847
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349823382|gb|FQ402581.1|FQ402581
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349826514|gb|FQ418605.1|FQ418605
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349810608|gb|FQ402851.1|FQ402851
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|349817896|gb|FQ407885.1|FQ407885
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
EST: gi|351057058|gb|FQ448575.1|FQ448575
EST:     GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAG                         GGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA
genomic: GGGACCTCTTCCGCAAAATTTTGGACTGGTTTCGCTCCAACAATCTTCAGgtctcttgtt ... gctaaagcagGGGTACGCACCAATTTGCTTGGGATTTGAAGATTTCTATAAGCGACGCCTA