1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTGAGAGAGAGAGATGGCGATGATGAAGCGAGTTGCTGAGTCTGCGGTTAGGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattttttttttctgcgtttttactccagacccagttgatcggttggttgactgatgaaattgatggttttttttgtctgtttggtttgctgttt...
species | Vitis vinifera |
transcript | Vv14s0066g01320.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|161706829|gb|FC057618.1|FC057618
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCA-GTCACCTCCAT GCTTCAGCTGGCAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAEST: gi|352785918|gb|FQ475921.1|FQ475921
genomic: GGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAG-CACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|352764500|gb|FQ472857.1|FQ472857
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|71875782|gb|DT024837.1|DT024837
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|29781912|gb|CB346743.2|CB346743
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|161716875|gb|FC068803.1|FC068803
genomic: GCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|349814228|gb|FQ414847.1|FQ414847
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|110374898|gb|EC939839.1|EC939839
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAGGCACCTCCAT GCTTCAGCTGGCAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|352781404|gb|FQ468248.1|FQ468248
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|30300514|gb|CB977308.1|CB977308
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAGGCACCTCCAT GCTTCAGCTGGCAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCTATGAAEST: gi|349814411|gb|FQ398851.1|FQ398851
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|349808355|gb|FQ405523.1|FQ405523
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACCTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|161712335|gb|FC061660.1|FC061660
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|352781529|gb|FQ468373.1|FQ468373
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|349826487|gb|FQ418578.1|FQ418578
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|110409955|gb|EC975630.1|EC975630
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|110374890|gb|EC939831.1|EC939831
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAGGCACCTCCAT GCTTCAGCTGGCAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|110685149|gb|EE063240.1|EE063240
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|71866313|gb|DT015368.1|DT015368
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAGGCACCTCCAT GCTTCAGCTGGCAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|34548582|gb|CF516814.1|CF516814
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAGGCACCTCCAT GCTTCAGCTGGCAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|161719093|gb|FC065413.1|FC065413
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|349826629|gb|FQ418720.1|FQ418720
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAAEST: gi|352768908|gb|FQ468099.1|FQ468099
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
EST: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCAT GCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
genomic: GGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattt ... ttggaaacagGCTTCAGCTGGAAGCAAAAAGATTGTTGGGGTGTTTTACAAGGCCAATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAGAGAGAGAGATGGCGATGATGAAGCGAGTTGCTGAGTCTGCGGTTAGGGCTTTTGCTCTGGGTTCTACTTCCGGGGCTCTTACCAAGCACCTCCATgtgagcattttttttttctgcgtttttactccagacccagttgatcggttggttgactgatgaaattgatggttttttttgtctgtttggtttgctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaaa