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ACAGAGCTCTCATTCTCAGTCTCTTATGGAGTCTCTGCTGCTAGCAGGCCTATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtacttttttcaaactcttcttctcatatctctgctgcttgatgtagctgtagcttgtattttttttttttaaaggaaaaaaaaaattgccgtgtgaaaa...
species | Vitis vinifera |
transcript | Vv14s0060g00230.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTEST: gi|161715681|gb|FC068376.1|FC068376
genomic: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTEST: gi|30324545|gb|CD007807.1|CD007807
genomic: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTEST: gi|71864790|gb|DT013845.1|DT013845
genomic: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTEST: gi|110373337|gb|EC937563.1|EC937563
genomic: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTEST: gi|352781141|gb|FQ466454.1|FQ466454
genomic: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGCGGATATGGGTEST: gi|30327012|gb|CD010274.1|CD010274
genomic: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTEST: gi|30327090|gb|CD010352.1|CD010352
genomic: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTEST: gi|32268077|gb|CD717236.1|CD717236
genomic: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTEST: gi|161714504|gb|FC062954.1|FC062954
genomic: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGTEST: gi|30326319|gb|CD009581.1|CD009581
genomic: TATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
EST: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAG TTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
genomic: GCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtactttttt ... atcgttgcagTTTGTTTAGATGGAACATTACCGGGGTATCATTTGCATCGTGGATATGGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGAGCTCTCATTCTCAGTCTCTTATGGAGTCTCTGCTGCTAGCAGGCCTATGATGGTAGGCTTAACCCTTATTCACGCTGCTGCTGCGAAAGGGGCAGgtacttttttcaaactcttcttctcatatctctgctgcttgatgtagctgtagcttgtattttttttttttaaaggaaaaaaaaaattgccgtgtgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgaaa