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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGGCACCATCCCCGCCGGTCGCATCAAGATGGAGCTCTTCTCCGACATCGCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattcttttctaacttcactcattttcttattttcaggatgatttccttttctttttctttcttcttatttgatgaatacaataatgatttgcag

Basic information

species Vitis vinifera
transcript Vv13s0084g00620.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os03g59700.1 (Oryza sativa), 5'ss of exon 1
------------------------TCGGCACCATCCCCGCCGGTCGCATCAAGATGGAGCTCTTCTCCGACATCGCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattcttttctaacttc-actcattt--tcttattttcaggatgatttccttttctttttctttctt-cttatttgatgaatacaataatgatttgcag
                        ||||  ||||||||||||| ||||||||||||||||||||| ||||||||| |||||| || || || || ||| || | |    ||     |||  |  | |    ||     |||  ||| |    |||  || |  ||      || || | |||  |   |||  ||   || ||| ||   |    |  || ||| |||
CGGTGGTGTTCTTCGACGTGACCATCGGGTCCATCCCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGTCCCCAAGACGGCGGAGAACTTCCGgtactgaccca-----gagccctcgctcgccttaaaccctaggttccatctgtttaatcctgcttctgatgtgtttgcttttgatggatctcactgatttgtttcatctgtttgtt--tggttt-cag

upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G057329_T01 (Zea mays), 5'ss of exon 1
------------------------TCGGCACCATCCCCGCCGGTCGCATCAAGATGGAGCTCTTCTCCGACATCGCCCCCAAAACCGCTGAAAATTTCAGGCAGT--TCTGCACTGGCGAGTACAGgt---ttttattcttttctaacttcactcattttcttattttcaggatgatttccttttctttttctttcttcttatttgatgaatacaataatgatttgcag
                        ||||  ||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| || || ||| ||   |   ||  ||   | | ||    |      ||   ||   |    | | || || |  |          |  ||  |  ||   |   | |||  |  | |      | |  |  |  ||| |||
CCGTGGTGTTCTTCGACGTGACCATCGGGTCCATCGCCGCCGGCCGCATCAAGATGGAGCTCTTCGCCGACATCGCCCCCAAGACCGCGGAGAACTTCCGgtgatggcctaaaccttcaactaaccataaaccctaggtttcattggtattattctttcttctgccgctgatgtatttgacacttggatagatctctaatcgtgt------tgctttgtttgttt-cag

upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA09G11960.1 (Glycine max), 5'ss of exon 1
------------------------TCGGCACCATCCCCGCCGGTCGCATCAAGATGGAGCTCTTCTCCGACATCGCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattcttttctaacttcactcattttcttattttcaggatgatttccttttctttttctttcttcttatttgatgaatacaataatgatttgcag
                        |||| | ||| ||||||||||| ||||||||||| |||||| |||| || ||||||||||| || || ||||||||| |  |  |      |   || | |  |   || | ||||   || | |      |||| ||    ||      | |    ||   | ||  |   |  |   | ||  | |            
CCATCGTCTTCTTCGATGTCACCATCGGTAACATTCCCGCCGGTCGAATCAAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgtttctactctta-aagcgtgcgttttcttct---tttagtg-----cttagtt---agactgcaccttgcctttaagcattgctaccaacttgcgcatgaact------------

upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G26260.1 (Glycine max), 5'ss of exon 1
------------------------TCGGCACCATCCCCGCCGGTCGCATCAAGATGGAGCTCTTCTCCGACATCGCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattcttttctaacttcactcattttcttattttcaggatgatttccttttctttttctttcttcttatttgatgaatacaataatgatttgcag
                        |||| | ||| ||||||||||| ||||||||||| |||||| |||| || ||||||||||| || || ||||||||| |  |  |      |   || | |  |   || | ||||   || | |      |||| ||    ||     || |   |||   | ||  |   |  |   ||||  | |            
CCATCGTCTTCTTCGATGTCACCATCGGTAACATTCCCGCCGGTCGAATCAAGATGGAACTCTTCGCCGATATTGCCCCCAAAACTGCCGAGAATTTCAGgtatctacgtttctactctta-aagcgtgcgttttcttct---tttagtg-----cttagtt---agactgcatcttgcccttaagcattgctaccaacttgcgaatgaact------------

upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA15G37190.1 (Glycine max), 5'ss of exon 1
------------------------TCGGCACCATCCCCGCCGGTCGCATCAAGATGGAGCTCTTCTCCGACATCGCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattcttttctaacttcactcattttcttattttcaggatgatttccttttctttttctttcttcttatttgatgaatacaataatgatttgcag
                        |||| | ||| ||||||||||| ||||||||||| |||||  |||| || ||||| |||||||| || ||||||||| |  | |||      | ||  | |  ||| |||||||    ||      | |  |   |       |  ||| |  |    || |  ||   ||| |  |                       
CCATCGTCTTCTTCGATGTCACCATCGGTAACATTCCCGCCGGTCGAATCAAGATGGAACTCTTTGCCGATATTGCCCCAAAAACCGCCGAGAATTTCAGgtatctatgcttcta-gtgttaaagcgtttcttcttttagtgctagttagagtgccccttggctttaagcattgctatcaacttgtgattgaacttctacg-----------------------

upper sequence: Vv13s0084g00620.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: AT2G38730.1 (Arabidopsis thaliana), 5'ss of exon 1
TCGGCACCATCCCCGCCGGTCGCATCAAGATGGAGCTCTTCTCCGACATCGCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattcttttctaacttcactcattttcttattttcaggatgatttccttttctttttctttcttcttatttgatgaatacaataatgatttgcag----
| ||    |||||||||||||| |||||||||||||||||| ||||||| || ||||||||||||||||| |||||||||||||| ||||| ||   |||||  |   |  | | |   || | |  ||     |||     |||  | |   ||  ||  |   |||| ||  ||   |  |  | | | |||||        
TTGGTGGTATCCCCGCCGGTCGTATCAAGATGGAGCTCTTCGCCGACATTGCTCCCAAAACCGCTGAAAACTTCAGGCAGTTCTGTACTGGTGAACTCAGgtactcgattctgtttctttttaatgtttactccattc----gattctctatcttcgttcctgcatcttattcgtttgaggttgaatttacgatttagtatttg

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110689345|gb|EE065486.1|EE065486
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|110369676|gb|EC933841.1|EC933841
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|30330499|gb|CD013761.1|CD013761
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|30330447|gb|CD013709.1|CD013709
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|71890647|gb|DT039702.1|DT039702
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|27586714|gb|CB009409.1|CB009409
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|110397718|gb|EC963561.1|EC963561
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|110377315|gb|EC942381.1|EC942381
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|71875212|gb|DT024267.1|DT024267
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|71871923|gb|DT020978.1|DT020978
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|110421609|gb|EC987908.1|EC987908
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|110408091|gb|EC973714.1|EC973714
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
EST: gi|71876171|gb|DT025226.1|DT025226
EST:     GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAG                         AAAAGCTGGGTTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT
genomic: GCCCCCAAAACCGCTGAAAATTTCAGGCAGTTCTGCACTGGCGAGTACAGgtttttattc ... tgatttgcagAAAAGCTGGATTACCTGTTGGTTACAAGGGATGCCAGTTCCACAGGGTCAT