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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCGCTACAACTGGGAGCCCATGAAGGACGATGTCGAGCTTGGGAATTCAGCTTACCCAATGGTTCTTGTGCAAATCCCAATGTACAATGAAAAAGAGgtaccaaataatatcatcatgatcatcaggtcctgaaattttttgtcatatcacgttctctcgcacatctgattttctgcttttgtttctgcag

Basic information

species Vitis vinifera
transcript Vv13s0074g00500.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00500.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA20G32990.1 (Glycine max), 5'ss of exon 1
GCAGCGCTACAACTGGGAGCCCATGAAGGACGATGTCGAGCTTGGGAATTCAGCTTACCCAATGGTTCTTGTGCAAATCCCAATGTACAATGAAAAAGAGgtaccaaataata---tcatcatgatcatcaggtcctgaaatttt---------------ttgtcatatcacg--ttctctcgcacatctgattttctgcttttgttt-ctgcag------------------------------------
  ||   || || ||||||||  | | ||| ||  | ||| |||| || || || ||||| |||||  | |||||||| |||||||||||||| |||||||||   | || ||   | ||     | |  |   |      ||||               |||| ||  || |  || | ||    |   | |||| |  |||| ||| ||| ||                                    
AAAGAAGTATAAATGGGAGCCACTCAGGGATGACCTTGAGTTTGGAAACTCTGCATACCCTATGGTCTTGGTGCAAATTCCAATGTACAATGAGAAAGAGgtaggtattactagagttatttcctttaataaacctcttttttttattcaaaagaaaaaattgttatgacatggattgtttcttgaaatagtttttttttttttttttactgaagttaaagtttttgtgggtactgtttcattggttgcag

upper sequence: Vv13s0074g00500.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA10G34550.1 (Glycine max), 5'ss of exon 3
GCAGCGCTACAACTGGGAGCCCATGAAGGACGATGTCGAGCTTGGGAATTCAGCTTACCCAATGGTTCTTGTGCAAATCCCAATGTACAATGAAAAAGAGgtaccaa-------ataatatcatcatgatcatca--ggtcctgaaattttttgtca--------tatcacgttctc--tcgcacatctgattttctgcttttgtttctgcag---------------------------------------
  ||   || || ||||||||  | | ||| ||  | ||| |||| || || || ||||| |||||  | |||||||| |||||||||||||| |||||||||  |        |||   | |||    |||  |   ||| |    || | | | |        | | | |   |   | |      ||| ||| |  |||| ||| | | |                                       
AAAGAAGTATAAATGGGAGCCACTCAGGGATGACCTTGAGTTTGGAAACTCTGCATACCCTATGGTCTTGGTGCAAATTCCAATGTACAATGAGAAAGAGgtattactattactatagagttatcccattcaataaaagtcttttctttatctataaaggaaaactgttatgacatggattgttttcttgaattttttattttttttttactgaagtgaaagtttttgagagtactgtttcattggttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156737268|gb|EV241389.1|EV241389
EST:     CAGCTTACCCAATGGTTCTTGTGCAAATCCCAATGTACAATGAAAAAGAG                         GTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAA
genomic: CAGCTTACCCAATGGTTCTTGTGCAAATCCCAATGTACAATGAAAAAGAGgtaccaaata ... gtttctgcagGTTTACCAGCTCTCCATTGGAGCTGCATGTGGCCTTTCATGGCCTTCTGAA