1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGTGCAGAAGAGCCAGACCATCAGCGACAGCATCGTCTCCATTCTCGGCTCCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagctcccactctgtttcaccagaggaatgctcatgctcatgctctttctgtttctctttctctctttccgatgtaccaaagcactctcgatcaa...
species | Vitis vinifera |
transcript | Vv13s0073g00170.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGEST: gi|352778158|gb|FQ468820.1|FQ468820
genomic: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
EST: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGEST: gi|110713084|gb|EE088694.1|EE088694
genomic: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
EST: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGEST: gi|110724162|gb|EE099748.1|EE099748
genomic: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
EST: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGEST: gi|352773871|gb|FQ473003.1|FQ473003
genomic: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
EST: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGEST: gi|30297888|gb|CB974682.1|CB974682
genomic: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
EST: TCTCTGCCCTCG-AACTGCCATGCGTCCCGCTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGEST: gi|352769773|gb|FQ468701.1|FQ468701
genomic: TCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
EST: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGEST: gi|37183965|gb|CF603319.1|CF603319
genomic: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
EST: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGEST: gi|352781498|gb|FQ468342.1|FQ468342
genomic: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
EST: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTGEST: gi|30297709|gb|CB974503.1|CB974503
genomic: CCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
EST: GTCTCTCTGCCCTCG-AACTGCCATGCGTCCCGCTCAG ATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
genomic: GTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagct ... gattttacagATTAGAACGCATTCTATTCGAAGAGCTCATGAGAATATTGACAAGACTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCAGAAGAGCCAGACCATCAGCGACAGCATCGTCTCCATTCTCGGCTCCTTCGACCACCGTCTCTCTGCCCTCGAAACTGCCATGCGTCCCACTCAGgtaggtagctcccactctgtttcaccagaggaatgctcatgctcatgctctttctgtttctctttctctctttccgatgtaccaaagcactctcgatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactctc