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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCATTCCTATCAACCCATCTCTCTTTCCACCGTCGCCACTCTCTTCGCCCGCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAAgtgagctttccttcattcttcttttcatgtcttttacctgctttttttcccccttatgttgatggttttgtgtgtgttgatttcacag

Basic information

species Vitis vinifera
transcript Vv13s0019g05250.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110728729|gb|EE104550.1|EE104550
EST:     CCGCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAA                         TGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
genomic: CCGCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAAgtgagctttc ... gatttcacagTGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
EST: gi|351028003|gb|FQ425904.1|FQ425904
EST:     CCGCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAA                         TGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
genomic: CCGCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAAgtgagctttc ... gatttcacagTGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
EST: gi|32249928|gb|CD715747.1|CD715747
EST:     GCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAA                         TGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
genomic: GCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAAgtgagctttc ... gatttcacagTGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
EST: gi|110382693|gb|EC947010.1|EC947010
EST:     CCGCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAA                         TGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
genomic: CCGCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAAgtgagctttc ... gatttcacagTGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
EST: gi|110389983|gb|EC954863.1|EC954863
EST:     CCGCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAA                         TGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
genomic: CCGCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAAgtgagctttc ... gatttcacagTGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
EST: gi|27578522|gb|CB001217.1|CB001217
EST:     GCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAA                         TGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG
genomic: GCTGCCTCGAACCCGGAATGCCAGAATCTCTTGTTCCGTCGCCTCCAAgtgagctttc ... gatttcacagTGAAGCTCCGGTGGCTGTGCAGGCTCAAGATCAAAAGATCAAGCCCGAGTG