1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCTCAATTCCGCAGCAGCATCAGCACCATGCGCACGCAGCTCCATCCAAGCAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcgtattcattctccccttttcttctactttctgtttggttgtcgagaaagttaagggaagtccaagattttgaatctgatgctttatatttt...
species | Vitis vinifera |
transcript | Vv13s0019g04090.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATGEST: gi|161718960|gb|FC066380.1|FC066380
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
EST: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATGEST: gi|294965000|gb|GW838803.1|GW838803
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
EST: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATGEST: gi|161712977|gb|FC062103.1|FC062103
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
EST: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATGEST: gi|37186163|gb|CF605516.1|CF605516
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
EST: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATGEST: gi|110426829|gb|EC993253.1|EC993253
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
EST: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATGEST: gi|161720059|gb|FC065103.1|FC065103
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
EST: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATGEST: gi|110711177|gb|EE087407.1|EE087407
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
EST: CAACTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATGEST: gi|30125638|gb|CB910977.1|CB910977
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
EST: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATGEST: gi|110686046|gb|EE063296.1|EE063296
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
EST: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAG GCTTCAAAAAGAGTTGATGGCCCTCATG
genomic: CAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcg ... ttaatttcagGCTTCAAAAAGAGTTGATGGCCCTCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCAATTCCGCAGCAGCATCAGCACCATGCGCACGCAGCTCCATCCAAGCAGCTCAAAGCTGCGCCTAACCCCGTCGACACCAGTTCCGTTTCTCAGAGgtccatttcgtattcattctccccttttcttctactttctgtttggttgtcgagaaagttaagggaagtccaagattttgaatctgatgctttatatttt
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagggaa