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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCAACACAACTTTAATACTCTCTAAAAGCCTCTCTCTCTTTTGATTCCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttctaccatttagttccttttttttggggggttgatttgttgtctgtgatttggtactttttttgatttgttagtttttggaattgaggattg...

Basic information

species Vitis vinifera
transcript Vv13s0019g03990.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351030947|gb|FQ438983.1|FQ438983
EST:     CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAG                         ATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
genomic: CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttc ... cattgtgcagATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
EST: gi|352787123|gb|FQ477743.1|FQ477743
EST:     CCTTTCTTCCTTTCTCATTCTGGG-TTTTTGTGCGCCTTAACGTTTACAG                         ATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
genomic: CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttc ... cattgtgcagATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
EST: gi|161708444|gb|FC056553.1|FC056553
EST:     CCTTTCTTCCTTTCTCATTCTGGG-TTTTTGTGCGCCTTAACGTTTACAG                         ATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
genomic: CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttc ... cattgtgcagATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
EST: gi|351024673|gb|FQ433088.1|FQ433088
EST:     CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAG                         ATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
genomic: CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttc ... cattgtgcagATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
EST: gi|71860360|gb|DT009415.1|DT009415
EST:     GGTTTTTTGTGCGCCTTAACGTTTACAG                         ATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
genomic: GGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttc ... cattgtgcagATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
EST: gi|71865159|gb|DT014214.1|DT014214
EST:     CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAG                         ATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
genomic: CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttc ... cattgtgcagATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
EST: gi|110698137|gb|EE075803.1|EE075803
EST:     CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAG                         ATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
genomic: CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttc ... cattgtgcagATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
EST: gi|294963982|gb|GW836857.1|GW836857
EST:     CCTTTCTTCCTTCCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAG                         ATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
genomic: CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttc ... cattgtgcagATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
EST: gi|161719344|gb|FC068284.1|FC068284
EST:     CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAG                         ATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG
genomic: CCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttc ... cattgtgcagATAGTTTTGCATTCTGAAAATGGATACTTTCTTCAGAGATTTAAATAAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGGCAACACAACTTTAATACTCTCTAAAAGCCTCTCTCTCTTTTGATTCCTTTCTTCCTTTCTCATTCTGGGTTTTTTGTGCGCCTTAACGTTTACAGgtaattcttctaccatttagttccttttttttggggggttgatttgttgtctgtgatttggtactttttttgatttgttagtttttggaattgaggattg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggggg