Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGGGGCGCTCCAGTCTTCAGAGACTTGTCCGGATCAACGGCTCCCATGGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagtttgacctgattttccttttcaggaatccctaattttaccatttccattttctttctgacgagctgatgtggaactgagagcag

Basic information

species Vitis vinifera
transcript Vv13s0019g00860.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30129186|gb|CB914525.1|CB914525
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|37190469|gb|CF609818.1|CF609818
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GGTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGGAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|30324865|gb|CD008127.1|CD008127
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|32245127|gb|CD710946.1|CD710946
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|30326448|gb|CD009710.1|CD009710
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|30322665|gb|CD005927.1|CD005927
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|110709351|gb|EE084734.1|EE084734
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|27583044|gb|CB005739.1|CB005739
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|18458172|gb|BM436450.1|BM436450
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|32244905|gb|CD710724.1|CD710724
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
EST: gi|32270281|gb|CD719440.1|CD719440
EST:     GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAG                         GTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC
genomic: GGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagttt ... ctgagagcagGTTTGAGCAAAGACGACATAAAGGTGGAGATAGAAGATGGAAACGTGTTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTGGGGCGCTCCAGTCTTCAGAGACTTGTCCGGATCAACGGCTCCCATGGACTGGCTAGAATCCCCAGCTGCCCACATCTTCAAATTCGATGTACCAGgtaggagtttgacctgattttccttttcaggaatccctaattttaccatttccattttctttctgacgagctgatgtggaactgagagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC