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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGATTTCAGTAATGTTTGTGGGTCATCTGGGAGAGCTAGCTCTCTCTGGTGCTTCCATGGCCACTTCCTTTGCTTCAGTCACTGGCTTCAGCTTGATTgtaagtaacatggattttttttttttttgtgtcatcatctcacacatccatccacatttgatttagctacttttgggttgtaccctttcgaatatctgtt...

Basic information

species Vitis vinifera
transcript Vv11s0052g01540.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857242|gb|DT006297.1|DT006297
EST:     GTGCTTCCATGGCCACTTCCTTTGCTTCAGTCACTGGCTTAAGCTTGATT                         GTAGGAATGGGAAGTGCATTAGACACCTTCTGTGGTCAGTCATTTGGAGCA
genomic: GTGCTTCCATGGCCACTTCCTTTGCTTCAGTCACTGGCTTCAGCTTGATTgtaagtaaca ... tgtttaatagGTAGGAATGGGAAGTGCATTAGACACCTTCTGCGGTCAGTCATTTGGAGCA
EST: gi|34542618|gb|CF510850.1|CF510850
EST:     GTGCTTCCATGGCCACTTCCTTTGCTTCAGTCACTGGCTTAAGCTTGATT                         GTAGGAATGGGAAGTGCATTAGACACCTTCTGTGGTCAGTCATTTGGAGCA
genomic: GTGCTTCCATGGCCACTTCCTTTGCTTCAGTCACTGGCTTCAGCTTGATTgtaagtaaca ... tgtttaatagGTAGGAATGGGAAGTGCATTAGACACCTTCTGCGGTCAGTCATTTGGAGCA
EST: gi|352773656|gb|FQ472438.1|FQ472438
EST:     GTGCTTCCATGGCCACTTCCTTTGCTTCAGTCACTGGCTTAAGCTTGATT                         GTAGGAATGGGAAGTGCATTAGACACCTTCTGTGGTCAGTCATTTGGAGCA
genomic: GTGCTTCCATGGCCACTTCCTTTGCTTCAGTCACTGGCTTCAGCTTGATTgtaagtaaca ... tgtttaatagGTAGGAATGGGAAGTGCATTAGACACCTTCTGCGGTCAGTCATTTGGAGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGATTTCAGTAATGTTTGTGGGTCATCTGGGAGAGCTAGCTCTCTCTGGTGCTTCCATGGCCACTTCCTTTGCTTCAGTCACTGGCTTCAGCTTGATTgtaagtaacatggattttttttttttttgtgtcatcatctcacacatccatccacatttgatttagctacttttgggttgtaccctttcgaatatctgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctttc