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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATATGATTTTCTGGCGGGGATCACCATCGCCAGCCTCGCCATACCTCAGGGGATCAGTTACGCTAAGCTCGCTGAGATTCCTCCCATCATTGGCCTGTgtaagtaggattcatggatatatcgatcgttgataatttcggatttgtttttagttttgtatttattcatgttctttttcag

Basic information

species Vitis vinifera
transcript Vv11s0016g04170.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04170.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os01g52130.1 (Oryza sativa), 5'ss of exon 1
AGATATGATTTTCTGGCGGGGATCACCATCGCCAGCCTCGCCATACCTCAGGGGATCAGTTACGCTAAGCTCGCTGAGATTCCTCCCATCATTGGCCTGTgtaagtaggattcatggatatatcgatcgttgata--atttcggatttgtttttagttt---tgtatttattcatgttctttttcag---------
|  |  ||  | || || || ||||||||||||||||||||||| || ||||| ||||| |||||    |||||  |  | ||||| ||||| ||||| |||| ||    | |  |     ||  ||   | ||    ||  | ||  |     |       || ||| |||  | || |||||  |         
AAGTTCGACCTCCTCGCCGGCATCACCATCGCCAGCCTCGCCATCCCGCAGGGCATCAGCTACGCCCGCCTCGCCAACCTCCCTCCAATCATCGGCCTCTgtacgtgtactgcgcgctcggatttattactaatgcgtttctgtatgcgcacgcacacccgatgaattaattggtttttttttttggggttgccag

upper sequence: Vv11s0016g04170.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G158013_T01 (Zea mays), 5'ss of exon 1
AGATATGATTTTCTGGCGGGGATCACCATCGCCAGCCTCGCCATACCTCAGGGGATCAGTTACGCTAAGCTCGCTGAGATTCCTCCCATCATTGGCCTGTgtaagtaggattcatggatatatcgatcgttgataatttcggatttgtttttag----ttttgtatt---tattcatgttc--tttttcag-----------------------------------------------------------------------------------------------
|  || ||  | || || ||| |||||||||||||||||||||| || ||||| ||||| ||||| ||||||||  |  | || |||||||| ||||| |||| ||| |   || |  |     | | | ||    |  ||  ||| | | | |    ||  |           || || |   || || |                                                                                               
AAGTACGACCTCCTCGCCGGGGTCACCATCGCCAGCCTCGCCATCCCGCAGGGCATCAGCTACGCCAAGCTCGCCAACCTCCCGCCCATCATCGGCCTCTgtacgtacg---cacgcgtgctctgctagctgcctgtgacgtctttctctctggatccttccgcgcggagcgcgcacgtccgccttctcggccatcacatgacgaaacacacatacttaccggagagacgtggacgttcgccgcaagcatattgattttaattttccttttggtgtcttgtactag

upper sequence: Vv11s0016g04170.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S2_677V6.2 (Physcomitrella patens), 5'ss of exon 2
-------------------------------------------------AGATATGATTTTCTGGCGGGGATCACCATCGCCAGCCTCGCCATACCTCAGGGGATCAGTTACGCTAAGC---TCGCTGAGATTCCTCCCATCATTGGCCTGTgtaagtaggattcatggatatatcgatcgttgataatttcggatttgtttttagttttgtatttattcatgttctttttcag
                                                      |||| |  | || || ||||||||||||||||||||||| |||||||        |   |||| |   |  || | || ||  |   ||||  | | |    |||  |||     | | | |    ||     | | | |    ||     |||||      | ||||  |   || |||
TCTCTTCCCAATGCTTGAATGGATCACTTCGTATAAATCCAGAATGTTTGTGGGTGATCTCATTGCAGGCATCACCATCGCCAGCCTCGCCATCCCTCAGgcacctctctttcctaaccaatttccttaaatgcc--ctggcattaacttattc--gtacaatttcgtaacaaagctgctgtcttccactacagga--gtaccacgttttcacggaagtcatcgttgattgcag

upper sequence: Vv11s0016g04170.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: PP1S2_677V6.1 (Physcomitrella patens), 5'ss of exon 3
AGATATGATTTTCTGGCGGGGATCACCATCGCCAGCCTCGCCATACCTCAGGGGATCAGTTACGCTAAGC---TCGCTGAGATTCCTCCCATCATTGGCCTGTgtaagtaggattcatggatatatcgatcgttgataatttcggatttgtttttagttttgtatttattcatgttctttttcag
                   | ||||||||||||||||||||||| |||||||        |   |||| |   |  || | || ||  |   ||||  | | |    |||  |||     | | | |    ||     | | | |    ||     |||||      | ||||  |   || |||
-------------------GCATCACCATCGCCAGCCTCGCCATCCCTCAGgcacctctctttcctaaccaatttccttaaatgcc--ctggcattaacttattc--gtacaatttcgtaacaaagctgctgtcttccactacagga--gtaccacgttttcacggaagtcatcgttgattgcag