1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGAGAGAGAGAGATGAGCAACGCCGCCCAGATTCCGACCAGCTTCGGGCACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctttttctctgtttggtttctcagagagtaaagcccttcctttttcatcaggctttgatattatacaaaaaaacgggttttgcttttgttccgcag
species | Vitis vinifera |
transcript | Vv10s0071g01040.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|33408217|gb|CF213844.1|CF213844
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|352795434|gb|FQ476549.1|FQ476549
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: GAGCTTGCCTCCGTTGCCGGCTCCTCCAAACCCTAC-ATCCG TTCCGAGAGTCCGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|110688876|gb|EE067932.1|EE067932
genomic: GAGCTTGCCTCCGTTGCAGGCTCGT-CAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: CAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|30296227|gb|CB973021.1|CB973021
genomic: CAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|33408305|gb|CF213932.1|CF213932
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|110407013|gb|EC972604.1|EC972604
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|351049428|gb|FQ450029.1|FQ450029
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTCGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|110412486|gb|EC978236.1|EC978236
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|294964123|gb|GW837926.1|GW837926
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|30296163|gb|CB972957.1|CB972957
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|30296421|gb|CB973215.1|CB973215
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|26258793|gb|CA809856.1|CA809856
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|26264415|gb|CA815478.1|CA815478
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTTCGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGACEST: gi|77585520|gb|DV221849.1|DV221849
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
EST: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAG TTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
genomic: ACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctt ... tgttccgcagTTCAGAGAGTCAGGCTGTGAAAATTGCCCCTTCTTTAAGATGGATGAAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAGAGAGAGAGATGAGCAACGCCGCCCAGATTCCGACCAGCTTCGGGCACGAGCTCAGAGCTTGCCTCCGTTGCAGGCTCGTCAAAACCTACGATCAGgtctttcctttttctctgtttggtttctcagagagtaaagcccttcctttttcatcaggctttgatattatacaaaaaaacgggttttgcttttgttccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT