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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCTCTTTTTTATTTCTCTGATTCAGTTCTTGTGGGTTTTCCTGGGTTTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTGgtaatttttaaacatttttttttaaaaaaaattgctatatttttttggggttttggggttttagatctgatcttgaatttacagtcttttttttttttttgtgtgggttttgatgttgaattatttttggcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02940.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30302571|gb|CB979365.1|CB979365
EST:     TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTG                         TCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
genomic: TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTGgtaattttta ... tttttggcagTCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
EST: gi|71856659|gb|DT005714.1|DT005714
EST:     TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTG                         TCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
genomic: TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTGgtaattttta ... tttttggcagTCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
EST: gi|110720644|gb|EE096747.1|EE096747
EST:     TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTG                         TCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
genomic: TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTGgtaattttta ... tttttggcagTCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
EST: gi|30302025|gb|CB978819.1|CB978819
EST:     TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTG                         TCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
genomic: TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTGgtaattttta ... tttttggcagTCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
EST: gi|71859557|gb|DT008612.1|DT008612
EST:     TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTG                         TCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
genomic: TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTGgtaattttta ... tttttggcagTCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
EST: gi|110726999|gb|EE103284.1|EE103284
EST:     TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTG                         TCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT
genomic: TTCCTCCTACACATCCGGGATGACCATCCTCATTGATCAGCCTGATTTTGgtaattttta ... tttttggcagTCGAGGTGGTGGAGAAGAAGGTGGATGTTGAACAGGAGAATGAACTGGTGT