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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTACATGGAGGAGACTTGGCCTCAGAATCCTTTGCTCCCACAGGACCCTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatatatctccatgtttttcagtttgtgttagttttagtagtgttttcttcctttatgtggtttgtttgaaggagaaatactgactaacaagcatattttctagcttcctatccgttgatttctatgacaaacaatcacatggtatggattctgcag

Basic information

species Vitis vinifera
transcript Vv07s0005g04890.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110421934|gb|EC988240.1|EC988240
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
EST: gi|28961939|gb|CB340989.1|CB340989
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
EST: gi|28961794|gb|CB340902.1|CB340902
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
EST: gi|22010800|gb|BQ795834.1|BQ795834
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
EST: gi|110422779|gb|EC989110.1|EC989110
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
EST: gi|349827223|gb|FQ421496.1|FQ421496
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
EST: gi|110410250|gb|EC975928.1|EC975928
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
EST: gi|110404980|gb|EC970507.1|EC970507
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
EST: gi|351016094|gb|FQ432049.1|FQ432049
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
EST: gi|26257858|gb|CA808921.1|CA808921
EST:     CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAG                         GGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG
genomic: CTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatat ... gattctgcagGGCCCAATTTTTATGGCAATCTTTGTAACTGTGGGAGAAGAACAAGAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAGTACATGGAGGAGACTTGGCCTCAGAATCCTTTGCTCCCACAGGACCCTTATGACAAGGCCATGGCTCGGTTCTGGGCAAAGTTTGGGGAGGACAAGgtgactatatatctccatgtttttcagtttgtgttagttttagtagtgttttcttcctttatgtggtttgtttgaaggagaaatactgactaacaagcatattttctagcttcctatccgttgatttctatgacaaacaatcacatggtatggattctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA