1 5' 3' | 2 5' 3' | 3 5' 3' |
GACAGGAAATTTTATGCATCTTGGCGGTCTTCCACAAGATGCATGAGCTGGACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAGgtatgcttcttcacctgatactgcctatctttcaccaaattgaggaccttgtcatgtgaaaaatattgaatccagaaatgtgggtttggtgtgactaatc...
species | Vitis vinifera |
transcript | Vv07s0005g01660.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAG CCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTTEST: gi|110686743|gb|EE064727.1|EE064727
genomic: GACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAGgtatgcttct ... ctggatgcagCCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTT
EST: CAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAG CCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTTEST: gi|110699306|gb|EE076187.1|EE076187
genomic: CAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAGgtatgcttct ... ctggatgcagCCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTT
EST: GACATCAAACCAAATGTTGTCACCTTCTCAACAATTCTAAATGCTTGCAG CCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTTEST: gi|110700546|gb|EE078710.1|EE078710
genomic: GACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAGgtatgcttct ... ctggatgcagCCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTT
EST: GACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAG CCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTTEST: gi|110386922|gb|EC951557.1|EC951557
genomic: GACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAGgtatgcttct ... ctggatgcagCCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTT
EST: GACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAG CCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTT
genomic: GACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAGgtatgcttct ... ctggatgcagCCGCTGTAATTCATTTGAAGATGCCTCAATGTTATTGGAGGAACTGCGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAGGAAATTTTATGCATCTTGGCGGTCTTCCACAAGATGCATGAGCTGGACATCAAACCAAATGTTGTCACCTTCTCAGCAATTCTAAATGCTTGCAGgtatgcttcttcacctgatactgcctatctttcaccaaattgaggaccttgtcatgtgaaaaatattgaatccagaaatgtgggtttggtgtgactaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata