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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAGGCTGGCCAGGCTGATGCGCTCAAAGCCGCTCTTGCGGAGTTCATTTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttttaaacttaaaacttaagcttcttgtttctttatcttaaactcaagtttagagaaataaatgaatggcgttttggcag

Basic information

species Vitis vinifera
transcript Vv06s0004g04120.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04120.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA13G40820.1 (Glycine max), 5'ss of exon 1
GCTGAGGCTGGCCAGGCTGATGCGCTCAAAGCCGCTCTTGCGGAGTTCATTTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaat-ttttttaaacttaaaacttaagcttcttgtttctttatcttaaactcaagtttagagaaataaatgaatggcgttttg-gcag----------------
 | |||     |||  ||||||| || || || || || || |||||||| ||  ||||||| ||||||||||| || |||||||| ||||||||||  |||||  || ||   | |||    || | |||  ||||  ||       |||     | |||  | ||  || ||  |  || |   ||                 
TCGGAGTTGAACCAATCTGATGCACTTAAGGCTGCACTAGCTGAGTTCATCTCAATGCTCATCTTTGTTTTTGCCGGGGAAGGCTCTGGAATGGCTTATAgtaaagttcttcctatttatttattcaactttatgttggttgg-----aacatgcatgtagtaatatgtatcaagagttttatacacatccaactataaataagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161706646|gb|FC055050.1|FC055050
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161711466|gb|FC058668.1|FC058668
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161708430|gb|FC057868.1|FC057868
EST:     TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161710430|gb|FC059029.1|FC059029
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161710788|gb|FC059865.1|FC059865
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161710126|gb|FC061024.1|FC061024
EST:     TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161710266|gb|FC060650.1|FC060650
EST:     TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161717636|gb|FC068526.1|FC068526
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161710866|gb|FC058166.1|FC058166
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161705506|gb|FC057073.1|FC057073
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161710227|gb|FC060631.1|FC060631
EST:     TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161710518|gb|FC058126.1|FC058126
EST:     TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|352790815|gb|FQ475452.1|FQ475452
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161707743|gb|FC056069.1|FC056069
EST:     TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161706184|gb|FC054954.1|FC054954
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161706049|gb|FC056728.1|FC056728
EST:     TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
EST: gi|161705421|gb|FC055300.1|FC055300
EST:     TTCTGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCA                         ATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG
genomic: TTCCGTGCTCATTTTTGTTTTTGCTGGCGAAGGCTCCGGAATGGCTTTCAgtaatttttt ... gttttggcagATAAGCTGACTGATGACGGGTCGTCGACACCGGCTGGCCTAGTTGCTGCGG