Sequence
atgc intronic sequence ATGC exonic sequenceCCAGCTCCGTCACATTAACATCGGCGAACTCGTCAGAGAGAAGAACTTGCACGACGGATGGGACGACCAGTTCGACTGCCACATCATCAACGAGGACCTGgtacccttaccctaactcccgttcggttcgccacacggtgtgataaagaaattttgttttcttttgttttcctagttttcttggcagccaaccggatcct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: LOC_Os07g22950.3 (Oryza sativa), 5'ss of exon 1
CCAGCTCCGTCACATTAACATCGGCGAACTCGTCAGAGAGAAGAACTTGCACGACGGATGGGACGACCAGTTCGACTGCCACATCATCAACGAGGACCTGgtacccttaccctaactcccgttcggttcgccacacggtgtgataaagaaattttgttttcttttgttttcctagttttct----tggcagccaacc--ggatcct
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GGACCTCCGCCACATCAACATCGGGGACCTCGTCCGCGAGAAGAGCCTCCATGACGGCTGGGACGAGGAGCTCGAGTGCCACATCATCAACGAGGACCTGgtat--tagcccgccctaccgcgcatctctcc---caatccaatcca-aatctctgttcgattctgcattccgaacaatctatattcatcattagccttagatttt
upper sequence: Vv06s0004g03280.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GRMZM2G032699_T02 (Zea mays), 5'ss of exon 1
CCAGCTCCGTCACATTAACATCGGCGAACTCGTCAGAGAGAAGAACTTGCACGACGGATGGGACGACCAGTTCGACTGCCACATCATCAACGAGGACCTGgtac-ccttaccctaactcccgttcggttcgccacacggtgtgataaagaaattttgttttcttttgttttcctagttttcttggcagccaaccggatcct
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AGGCCTCCGCCACGTCAACATCGGCGACCTCGTCCGCGAGAAGAGCCTCCACGACGGCTGGGACGCCGACCTCGAGTGCCATGTCATCAACGAGGACCTGgtaagtctcgcctctgcccaactgagctccgctccgctcctttcttcggatattcc-tctcttcgtcctatcgtgttaatctcgaccgtaatgttcagcatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77577867|gb|DV217683.1|DV217683EST: ACGACGGATGGGACGACCAGTTCGACTGCCACATCATCAACGAGGACCTG GTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGAC
genomic: ACGACGGATGGGACGACCAGTTCGACTGCCACATCATCAACGAGGACCTGgtacccttac ... gtttttgcagGTGTGCGATGAGCTCGAGGATTTGATGGAAGAAGGGGGAAACATTGTGGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCAGCTCCGTCACATTAACATCGGCGAACTCGTCAGAGAGAAGAACTTGCACGACGGATGGGACGACCAGTTCGACTGCCACATCATCAACGAGGACCTGgtacccttaccctaactcccgttcggttcgccacacggtgtgataaagaaattttgttttcttttgttttcctagttttcttggcagccaaccggatcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa