1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GATGATGCTGAGGGTGTTTTCAGCGAGGTCTCTGTTCAGAAAGGACAGGCTTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctccctctcttatctgtctatttgattttggtgtttcgtcgatgtatttttgtttctgcctatggaggattcaatggttttttaagtttggcgg...
species | Vitis vinifera |
transcript | Vv06s0004g03140.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|71863207|gb|DT012262.1|DT012262
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACAGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|352764155|gb|FQ467725.1|FQ467725
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|22010794|gb|BQ795828.1|BQ795828
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACAGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|352777019|gb|FQ474326.1|FQ474326
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|71862993|gb|DT012048.1|DT012048
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACAGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|352781928|gb|FQ469225.1|FQ469225
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|71858487|gb|DT007542.1|DT007542
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACAGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|352772398|gb|FQ469923.1|FQ469923
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|71862585|gb|DT011640.1|DT011640
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACAGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|110729869|gb|EE106297.1|EE106297
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACAGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|71858852|gb|DT007907.1|DT007907
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|71861474|gb|DT010529.1|DT010529
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACAGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|352778090|gb|FQ467143.1|FQ467143
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|71863944|gb|DT012999.1|DT012999
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACAGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCAEST: gi|352777839|gb|FQ466892.1|FQ466892
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACCAGAAAACATTGCTCCTCATGCAEST: gi|352781277|gb|FQ466590.1|FQ466590
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
EST: TTCGTGCTGCTTTCTCCCCGGCTCTGCTCTTCCACCATACTCAGATACAA TTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCCTGCA
genomic: TTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctcc ... aacatgacagTTTAAAGAAAGCATTGCACAGTTTGCACAAGAAAACATTGCTCCTCATGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATGCTGAGGGTGTTTTCAGCGAGGTCTCTGTTCAGAAAGGACAGGCTTCGTGCTGCTTTCTCCACGGCTCTGCTCTTCGACGATACTCAGATACAAgtctctctccctctcttatctgtctatttgattttggtgtttcgtcgatgtatttttgtttctgcctatggaggattcaatggttttttaagtttggcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctc