Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCATCCAGTACAACATCTTCGGGAACATCTTCGAGGTCACGGCCAAATACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgcaatctcgctcgtttgtctcgttctctacgttggtgattttttattttttatttatttttgttttgagatttttgattcgatttggtttcttttggtggtag

Basic information

species Vitis vinifera
transcript Vv05s0094g00900.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717363|gb|FC065278.1|FC065278
EST:     TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG                         CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
EST: gi|161714347|gb|FC062648.1|FC062648
EST:     TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG                         CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
EST: gi|161717362|gb|FC065277.1|FC065277
EST:     TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG                         CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
EST: gi|161716253|gb|FC068076.1|FC068076
EST:     TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG                         CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
EST: gi|110713988|gb|EE090389.1|EE090389
EST:     TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTG                         CTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC
genomic: TACAAGCCTCCAATCATGCCCATAGGGAAGGGCGCTTACGGCATCGTGTGgtaaagtgca ... ttggtggtagCTCGGCTCTGAATTCGGAGACGAACGAGCACGTGGCGCTAAAGAAAATAGC