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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATCCTCTCTCTGAATTGTCAGAAATACCAGATCACAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttctaaccctaaccctcctgtttggtttccgagaaaatcgaggaaagtgaaaagaatatatcgagcttttttgttatgtttttattaggtttgc...

Basic information

species Vitis vinifera
transcript Vv05s0094g00760.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110364434|gb|EC924165.1|EC924165
EST:     CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCACAACTAAGGGCAAGAACGG
genomic: CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|30127369|gb|CB912708.1|CB912708
EST:     CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
genomic: CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|30126186|gb|CB911525.1|CB911525
EST:     CACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
genomic: CACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|110689882|gb|EE066505.1|EE066505
EST:     CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
genomic: CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|51051586|gb|CO819131.1|CO819131
EST:     CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCACAACTAAGGGCAAGAACGG
genomic: CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|37188157|gb|CF607508.1|CF607508
EST:     CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
genomic: CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|110732361|gb|EE107579.1|EE107579
EST:     CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
genomic: CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|110427382|gb|EC993819.1|EC993819
EST:     CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
genomic: CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|110419085|gb|EC985279.1|EC985279
EST:     CACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCACAACCAAGGGCAAGAACGG
genomic: CACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|30125702|gb|CB911041.1|CB911041
EST:     CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCACAACTAAGGGCAGGAACGG
genomic: CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
EST: gi|110422425|gb|EC988750.1|EC988750
EST:     CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAG                         GCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG
genomic: CAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttct ... ttggttgaagGCACAGAAAAATGGCTGGATTCAGTGGTCTCCCAACTAAGGGCAAGAACGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCATCCTCTCTCTGAATTGTCAGAAATACCAGATCACAGCTCTAGGGTTTTAAGTAGGGTTTTGAACTCAAAGACCACAATTTCAGgtatatttctaaccctaaccctcctgtttggtttccgagaaaatcgaggaaagtgaaaagaatatatcgagcttttttgttatgtttttattaggtttgc

- - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa