1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ATTCCTCTGGTTTTGATCAGCCAAGGTTGGTGGTCAAGAAGGTCTTGGCCAAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAGgtttgttcttaatatttttttttattagtatgtgtttgttttttttggcaattttgattcatgggtctttgttttcttgagattttttccatctgggtgttgaattgtttgtggattttgattgctgggtttgttgactttcag
species | Vitis vinifera |
transcript | Vv05s0062g01190.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAG GAGTGAATTGAAAAACCTGGATCCTTTTCTCATGTTGGATGAGTTCGCAGEST: gi|71880887|gb|DT029942.1|DT029942
genomic: AAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAGgtttgttctt ... tgactttcagGAGTGAATTGAAAAACCTGGATCCTTTTCTCATGTTGGATGAGTTCGCAG
EST: AAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAG GAGTGAATTGAAAAACCTGGATCCTTTTCTCATGTTGGATGAGTTCGCAGEST: gi|71854721|gb|DT003776.1|DT003776
genomic: AAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAGgtttgttctt ... tgactttcagGAGTGAATTGAAAAACCTGGATCCTTTTCTCATGTTGGATGAGTTCGCAG
EST: AAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAG GAGTGAATTGAAAAACCTGGATCCTTTTCTCATGEST: gi|161718051|gb|FC067586.1|FC067586
genomic: AAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAGgtttgttctt ... tgactttcagGAGTGAATTGAAAAACCTGGATCCTTTTCTCATG
EST: AAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAG GAGTGAATTGAAAAACCTGGATCCTTTTCTCATGTTGGATGAGTTCGCAG
genomic: AAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAGgtttgttctt ... tgactttcagGAGTGAATTGAAAAACCTGGATCCTTTTCTCATGTTGGATGAGTTCGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCCTCTGGTTTTGATCAGCCAAGGTTGGTGGTCAAGAAGGTCTTGGCCAAGCCTCAACGTGAGGGTGAGGGTGCTGTTGTTAGGAGGAGCATTGGAAGgtttgttcttaatatttttttttattagtatgtgtttgttttttttggcaattttgattcatgggtctttgttttcttgagattttttccatctgggtgttgaattgtttgtggattttgattgctgggtttgttgactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG