1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAATTTTAAAGTGAGGAGGAAAGGGCCGACTGCTGCGGCGGCTTCGAGTTCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttttttttttttctgaattttttattctctatctgcttgctccgtttgttagtgagaaaatgtaggaaggggaaggaaattgaaattcataaa...
species | Vitis vinifera |
transcript | Vv05s0020g04870.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGAEST: gi|110389589|gb|EC954442.1|EC954442
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGAEST: gi|161718153|gb|FC065659.1|FC065659
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGAEST: gi|161719072|gb|FC065699.1|FC065699
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGAEST: gi|37185234|gb|CF604587.1|CF604587
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGAEST: gi|30128566|gb|CB913905.1|CB913905
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGAEST: gi|161721068|gb|FC069658.1|FC069658
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGAEST: gi|161720368|gb|FC070172.1|FC070172
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAAGATATTGTCACAGAAAATGAEST: gi|110688125|gb|EE066317.1|EE066317
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGAEST: gi|33409206|gb|CF214833.1|CF214833
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
EST: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAG TCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
genomic: TCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttt ... ttttctgcagTCTTGATACTAGACCTGCAGAAATAGAGCAGGATATTGTCACAGAAAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAATTTTAAAGTGAGGAGGAAAGGGCCGACTGCTGCGGCGGCTTCGAGTTCGCCGGCGGGGACGGCGCGATCGGTGGAGGGAAATGGAGGCGATGTTAGgtgagttttttttttttttctgaattttttattctctatctgcttgctccgtttgttagtgagaaaatgtaggaaggggaaggaaattgaaattcataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaat