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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTTTTCGGTCACATCAGCCACTCAGTTCGACGTCGATTATCTGGGGCAGAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTGgtaacttcactctttctgccttttggtatcgtttccctctctcttccccggaaagcttcccacttctcttcacttgtag

Basic information

species Vitis vinifera
transcript Vv05s0020g00880.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690628|gb|EC955261.1|EC955261
EST:     GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTG                         GCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG
genomic: GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTGgtaacttcac ... tcacttgtagGCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG
EST: gi|352763403|gb|FQ471715.1|FQ471715
EST:     GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTG                         GCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG
genomic: GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTGgtaacttcac ... tcacttgtagGCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG
EST: gi|352776896|gb|FQ474203.1|FQ474203
EST:     GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTG                         GCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG
genomic: GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTGgtaacttcac ... tcacttgtagGCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG
EST: gi|352773984|gb|FQ473116.1|FQ473116
EST:     GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTG                         GCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG
genomic: GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTGgtaacttcac ... tcacttgtagGCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG
EST: gi|352772410|gb|FQ469935.1|FQ469935
EST:     GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTG                         GCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG
genomic: GAGCACCAAGGGTGATTTGAATGTCAAATCCGACCATCTGGACTCTTTTGgtaacttcac ... tcacttgtagGCCTTGGAGGTCGATCAGCCTTGGAGGGTCCAATTGAGGAAGTTGCCAGGG