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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCAGCCACAGCCATGGCTCTGTCGGAGACGGCATCAGAGTCCAATGCCTCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatctacatctctctttctctctctctctctttctatatatatgtttggatccaggtggaaatatacatatatgttcggaattatgaacatatatagggtggtggtgcag

Basic information

species Vitis vinifera
transcript Vv04s0079g00600.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110370088|gb|EC934268.1|EC934268
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|71858430|gb|DT007485.1|DT007485
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|110732551|gb|EE107937.1|EE107937
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCAGGAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCATACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|110719931|gb|EE095474.1|EE095474
EST:     TCCACCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCATACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|352764779|gb|FQ471839.1|FQ471839
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|352777885|gb|FQ466938.1|FQ466938
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|71856790|gb|DT005845.1|DT005845
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|110721944|gb|EE097740.1|EE097740
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCATACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|71856168|gb|DT005223.1|DT005223
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|110394088|gb|EC958547.1|EC958547
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|351014370|gb|FQ437372.1|FQ437372
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|352782597|gb|FQ476677.1|FQ476677
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|110688418|gb|EE066946.1|EE066946
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|351022400|gb|FQ445175.1|FQ445175
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|352795004|gb|FQ477114.1|FQ477114
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|351014363|gb|FQ437365.1|FQ437365
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|71858063|gb|DT007118.1|DT007118
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|352785695|gb|FQ475698.1|FQ475698
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|349826582|gb|FQ418673.1|FQ418673
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|352794614|gb|FQ475112.1|FQ475112
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT
EST: gi|110728467|gb|EE104071.1|EE104071
EST:     TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAG                         GTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCATACCAGATAAT
genomic: TCCATCCACTCCACCTTCGCTTCTCGATATGTTAGAGTTTCGCTCCCAAGgtcattatct ... ggtggtgcagGTTCAAGATTCCGGAGAATTCGATACCGAAGGAGGCAGCGTACCAGATAAT