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AGCATGTTGCAGAGACCTAGACGAAGGTGCGAGGGCACGGCCATGGGTGCCATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTGgtaattccttccccctcttttttttcccaatttttttgctcatgattcaattaaataataatttccgatacagcaatcgcaagggagtcgagttatgtga...
species | Vitis vinifera |
transcript | Vv04s0023g02970.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTG GGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTTEST: gi|110718343|gb|EE095064.1|EE095064
genomic: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTGgtaattcctt ... tttgtttcagGGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTT
EST: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTG GGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTTEST: gi|294963767|gb|GW836617.1|GW836617
genomic: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTGgtaattcctt ... tttgtttcagGGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTT
EST: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTG GGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTTEST: gi|110730101|gb|EE106793.1|EE106793
genomic: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTGgtaattcctt ... tttgtttcagGGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTT
EST: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTG GGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTTEST: gi|27586273|gb|CB008968.1|CB008968
genomic: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTGgtaattcctt ... tttgtttcagGGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTT
EST: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTG GGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTT
genomic: CATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTGgtaattcctt ... tttgtttcagGGATGCCGATCTCCAAAGCGTTTGCTCAAATAGAGCAACAGCCTAACATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCATGTTGCAGAGACCTAGACGAAGGTGCGAGGGCACGGCCATGGGTGCCATCGTTCTGGATCTTAAGCCCGGACTTGGAATAGGGCCTTTCTCCCTTGgtaattccttccccctcttttttttcccaatttttttgctcatgattcaattaaataataatttccgatacagcaatcgcaagggagtcgagttatgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaggga