1 5' 3' | 2 5' 3' |
GTCATACAGAAGGTTGGCTATGAAATGGCATCCTGATAAGAATCCCAATAACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGgtttcattcctaaatttttgttgttcttctttgtcggttttttttctatgttcatttctttttcttctctctctctcttgttcgatttttgggcgttagg...
species | Vitis vinifera |
transcript | Vv04s0008g04300.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAG GTTTTGAGTGATCCACAGAAAAAGGTGGTTTATGATCAGCATGGGGAAGAAEST: gi|37183969|gb|CF603323.1|CF603323
genomic: ACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGgtttcattcc ... attgatacagGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAA
EST: ACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAG GTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAA
genomic: ACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGgtttcattcc ... attgatacagGTTTTGAGCGATCCGCAGAAAAAGGTGGTTTATGATCAGCATGGTGAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCATACAGAAGGTTGGCTATGAAATGGCATCCTGATAAGAATCCCAATAACAAGAAGGAGGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGgtttcattcctaaatttttgttgttcttctttgtcggttttttttctatgttcatttctttttcttctctctctctcttgttcgatttttgggcgttagg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc