1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTCTCGAAAAGGGTAATGCAAGGAAGGTCTCGGATGCAGCAGCAGGAAGTGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggattttctcacttcccctgtactgggtgtcttggcttcttacctgtcgtccatctttaccttccaatttgttcgatcacccaccattttttagatgggtcgatgagctctaaccataaggtctatacatatctgattgttgttgctgcag
species | Vitis vinifera |
transcript | Vv02s0025g02640.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAG TTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCGEST: gi|110384986|gb|EC949461.1|EC949461
genomic: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggatttt ... gttgctgcagTTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCG
EST: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAG TTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCGEST: gi|27580835|gb|CB003530.1|CB003530
genomic: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggatttt ... gttgctgcagTTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCG
EST: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAG GTCAGGAAACTCTTTCCACCGACGAGEST: gi|110374326|gb|EC939496.1|EC939496
genomic: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggatttt ... gttgctgcagTTCAGGAAACTCTTTCCACCGACGAG
EST: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAG TTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCGEST: gi|110379290|gb|EC944475.1|EC944475
genomic: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggatttt ... gttgctgcagTTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCG
EST: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAG TTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCGEST: gi|110376860|gb|EC941936.1|EC941936
genomic: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggatttt ... gttgctgcagTTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCG
EST: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAG TTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCGEST: gi|110372636|gb|EC936820.1|EC936820
genomic: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggatttt ... gttgctgcagTTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCG
EST: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAG TTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCGEST: gi|27755371|gb|CB036126.1|CB036126
genomic: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggatttt ... gttgctgcagTTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCG
EST: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAG TTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCG
genomic: TGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggatttt ... gttgctgcagTTCAGGAAACTCTTTCCACCGACGAGGTGGGCTGCAGAGTTCAATGCTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCTCGAAAAGGGTAATGCAAGGAAGGTCTCGGATGCAGCAGCAGGAAGTGGTTAGAGAGGTCCTCTTGTCCATGCTCCCTCCTGGCGCCCCTGATCAGgtgggattttctcacttcccctgtactgggtgtcttggcttcttacctgtcgtccatctttaccttccaatttgttcgatcacccaccattttttagatgggtcgatgagctctaaccataaggtctatacatatctgattgttgttgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG