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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACGTACGCTACAATGTGTACGGAAACTTTTTCGAGGTCTCTGCAAAGTATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGgtgagttattgtactaatttcaaccttatttccgtgttaatcagtatggattttggtatttatttatgggttttcgtgttttgttctgttgacctgcata...

Basic information

species Vitis vinifera
transcript Vv02s0025g00270.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA01G43100.1 (Glycine max), 5'ss of exon 1
GCTACGTACGCTACAATGTGTACGGAAACTTTTTCGAGGTCTCTGCAAAGTATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGgtgagttattgtactaatttcaaccttatttccgtgttaatcagtatggattttggtatttatttatgggttttcgtgttttgttctgttgacctgcata
| ||||| |  ||||| |||||||||||||| |||||||||||  | |||||||| ||||| ||||| || || |||||||| ||||| ||||| || ||||   |     | |   |||   | ||  |||  | |||  |   |   ||  |  |   | ||| |   || ||   | |                   
GATACGTGCAATACAACGTGTACGGAAACTTGTTCGAGGTCTCCTCCAAGTATGTCCCTCCCATTCGCCCTGTCGGTAGAGGCGCATACGGCATCGTTTGgtatctatccatgc--gttttcccttttcttctctcttatacttca-atatcctcctcactgtttgttctttctcacttctcag----------------

upper sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA05G37480.1 (Glycine max), 5'ss of exon 1
GCTACGTACGCTACAATGTGTACGGAAACTTTTTCGAGGTCTCTGCAAAGTATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGgtgagt--tattgtactaatttcaaccttatttccgtgttaatcagtatggattttggtatttatttatgggttttcgtgttttgtt-ctgttgacctgcata
  |||| ||  ||||||||||| |||||||| |||||||| ||| | |||||||| ||||| ||||| ||  |||||||||| |   ||||||| ||||||| |||  | |  | |    |||||  |||  | | |   | |   |||    || || | | |||||||     | |     |||| || || |        
AATACGCACATTACAATGTGTATGGAAACTTGTTCGAGGTGTCTTCCAAGTATGTGCCTCCTATTCGCCCTATTGGTAGAGGCGTTAATGGCATAGTCTGgttagtgttttatttccttcttcaaatttaaatgcataa-atttgatatttgctt-ggaaatgatttatgttcacttgaacaatgtttctttttag-------

upper sequence: Vv02s0025g00270.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA08G02060.1 (Glycine max), 5'ss of exon 1
GCTACGTACGCTACAATGTGTACGGAAACTTTTTCGAGGTCTCTGCAAAGTATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGgtgagt--tattgtactaatttcaaccttatttccgtgttaatcagtatggattttggtatttatttatgggttttcgtgttttgttctgttgacctgcata
  |||| ||  ||||||||||| |||||||| |||||||| ||| | |||||||| ||||| ||||| ||  |||||||||| |   ||||||| ||||||| |||  | |  | |    |||||  |||  | | |   | |   |||    || |  ||   ||||||     | |     ||||   ||   | |    
AATACGCACAGTACAATGTGTATGGAAACTTGTTCGAGGTGTCTTCCAAGTATGTGCCTCCTATTCGCCCTATTGGTAGAGGCGTTAATGGCATAGTCTGgtaagtgttttatttccttcttcaaatttaaatgcataa-atttgatatttgcttagaaatgattttatgttcacttgaacaatgtttcttt--tcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857199|gb|DT006254.1|DT006254
EST:     TATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTG                         TGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGG
genomic: TATGTTCCTCCGATTCGTCCGGTTGGTAGAGGTGCATATGGCATTGTCTGgtgagttatt ... ttcttttcagTGCTGCAGTAAATTCAGAAACACATGAGGAGGTTGCCATTAAGAAGATTGG