1 5' 3' | 2 5' 3' |
GGTTTCCGGCGTCGACGTGTTCCTTGGTTTTCCCTCCAACGGCGGCCTCCGCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAAgtcagcttctttctccagctctcttttttctcttttctttgtcttctcctttttgcttctatttgtttcccacgaaaattcaatttctttctttctttct...
species | Vitis vinifera |
transcript | Vv02s0012g02240.t01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAA AATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTTEST: gi|110373003|gb|EC937206.1|EC937206
genomic: GCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAAgtcagcttct ... tttcttgcagAATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTT
EST: GCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAA AATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTT
genomic: GCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAAgtcagcttct ... tttcttgcagAATCTTCTTTTCAGAAGCTGCCCTTCATTTTGCATTCCGAAGCTAGGAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTCCGGCGTCGACGTGTTCCTTGGTTTTCCCTCCAACGGCGGCCTCCGCTCCCCGGAGTTTAGGCATTCCCATACTTTCTCCGCTGGAACCTTCAAAgtcagcttctttctccagctctcttttttctcttttctttgtcttctcctttttgcttctatttgtttcccacgaaaattcaatttctttctttctttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgaaaa