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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGCAGCAAAAATGGCTGCAAATGAAGTTCAGAGCAAAGCCTCTTCCAATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAGgtaaaaccccacacccagtactgcataaaccacctttaaattctcagattccccaattcaaactataatttttctttttctttgactttttgtttttttttgttccaaag

Basic information

species Vitis vinifera
transcript Vv01s0146g00120.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351039710|gb|FQ464748.1|FQ464748
EST:     ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAG                         GCCGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
genomic: ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAGgtaaaacccc ... tgttccaaagGCAGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
EST: gi|33407684|gb|CF213311.1|CF213311
EST:     ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAG                         GCAGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
genomic: ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAGgtaaaacccc ... tgttccaaagGCAGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
EST: gi|351056524|gb|FQ455176.1|FQ455176
EST:     ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAG                         GCCGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
genomic: ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAGgtaaaacccc ... tgttccaaagGCAGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
EST: gi|110724885|gb|EE101102.1|EE101102
EST:     ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAG                         GCAGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
genomic: ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAGgtaaaacccc ... tgttccaaagGCAGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
EST: gi|351032774|gb|FQ462488.1|FQ462488
EST:     ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAG                         GCCGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
genomic: ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAGgtaaaacccc ... tgttccaaagGCAGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
EST: gi|161706834|gb|FC055525.1|FC055525
EST:     ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAG                         GCAGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA
genomic: ATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAGgtaaaacccc ... tgttccaaagGCAGCAGATAAATACCCTTATTTTCCAGGCCAAGAACCCACTTTACCTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTGCAGCAAAAATGGCTGCAAATGAAGTTCAGAGCAAAGCCTCTTCCAATGCCAAAATAATTGATTCTCATCTTCATGTATGGGCATCTGCTGAAGAGgtaaaaccccacacccagtactgcataaaccacctttaaattctcagattccccaattcaaactataatttttctttttctttgactttttgtttttttttgttccaaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA