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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTGTTGCGGTCCCCATGCCTTTCACTACTTATACCTACATTGCAGATCCTGCCAATGTAGAACATGTCCTCAAGACCAACTTTGCCAATTATCCCAAGgtgacacgtctcatgcacacatgaaagctccttcagcttcatttttctttaattttgacattgagttcaagagcttcattttcttttactcatgatctcataggagaacttgcacctcttgtttctattacggtctgtatttgatgaaaacaagtgtacttttgttactgtcacttaag

Basic information

species Vitis vinifera
transcript Vv01s0026g02700.t01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g02700.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA07G04840.1 (Glycine max), 5'ss of exon 1
AACTGTTGCGGTCCCCATGCCTTTCACTACTTATACCTACATTGCAGATCCTGCCAATGTAGAACATGTCCTCAAGACCAACTTTGCCAATTATCCCAAGgtgacacgtctcatgcacacatgaaagctccttcagcttcatttttctttaattttgacattgagttcaagagcttcattttcttttactcatgatctcataggagaacttgcacctcttgtttctattacggtctgtatttgatgaaaacaagtgtacttttgttactgtcacttaag
|||  ||| |||||| ||||||||||| |||||||| |||||||| |||||||| |||||||||||||| || |||||||||||   ||||||||| |||||        | |    ||  |      | |||||   | |    |  |    | ||  ||   |||  |    |   |  | ||||| |  |||    ||||   |                                                                        
AACCATTGTGGTCCCTATGCCTTTCACAACTTATACTTACATTGCTGATCCTGCTAATGTAGAACATGTACTTAAGACCAACTTCAACAATTATCCAAAGgtagtctacattacat-catttc----ttgcttcaatattaaaccttatgg--tgtgggatcatgtttgaatcgtatttaatgttttatttttgagtaaatagttta------------------------------------------------------------------------

upper sequence: Vv01s0026g02700.t01 (Vitis vinifera), 5'ss of exon 1
lower sequence: GLYMA16G01420.1 (Glycine max), 5'ss of exon 1
AACTGTTGCGGTCCCCATGCCTTTCACTACTTATACCTACATTGCAGATCCTGCCAATGTAGAACATGTCCTCAAGACCAACTTTGCCAATTATCCCAAGgtgacacgtctcatgcacacatgaaagctccttcagcttcatttttctttaattttgacattgagttcaagagcttcattttcttttactcatgatctcataggagaacttgcacctcttgtttctattacggtctgtatttgatgaaaacaagtgtacttttgttactgtcacttaag
|||  ||| |||||| ||||||||||| |||||||| |||||||| |||||||| |||||||||||||| || |||||||||||   ||||||||| ||||| |      | |  | ||  |      | |||||   | |       |    | ||| ||    ||  |    |   |  | ||||| |  |||    ||||                                                                            
AACCATTGTGGTCCCTATGCCTTTCACCACTTATACTTACATTGCTGATCCTGCTAATGTAGAACATGTGCTTAAGACCAACTTCAACAATTATCCAAAGgtaatctacattacac-catttc----ttgcttcaatattaaaccatatgg--tatgagatcatatttgaatcgtatttaatgttttatttttgagtaaatag----------------------------------------------------------------------------