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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAAAAAAAAAAAAAAGGAAGAGGAAAAATGGGGAGCTTTGTGGTGCAGTTCCCCAGCAAATTGAGGAACTTCACAGTTTGGGCTTCACCCAACAATGgtaaaatctccactttgattcattccttcatccaatcacacatctgctttactttcagttctgtttcaatggggtttttgggtggttttcatttttcag

Basic information

species Vitis vinifera
transcript Vv01s0011g01620.t01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110426960|gb|EC993389.1|EC993389
EST:     GTTCCCCAGCAAATTGAGGAACTTCACAGTTTGGGCTTCACCCAACAATG                         GGGTCCCATTCGATTCTCCACAGTCCAGAGGGCCAGTGATTTTGGAACTCC
genomic: GTTCCCCAGCAAATTGAGGAACTTCACAGTTTGGGCTTCACCCAACAATGgtaaaatctc ... catttttcagGGGTCCCATTTGATTCTCCGCAGTCCAGAGGGCCAGTGATTTTGGAACTCC
EST: gi|32458122|gb|CD799296.1|CD799296
EST:     TCCCCACAGCAAATTGAGGAACTTCACAGTTTGGGCTTCACCCAACAATG                         GGGTCCCATTCGATTCTCCACAGTCCAGAGGGCCAGTGATTTTGGAACTCC
genomic: T-CCC-CAGCAAATTGAGGAACTTCACAGTTTGGGCTTCACCCAACAATGgtaaaatctc ... catttttcagGGGTCCCATTTGATTCTCCGCAGTCCAGAGGGCCAGTGATTTTGGAACTCC