1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTGTTTTCTAGATCTTGCCAGAGATTATGAGCCCCATGCGGAACTCTCCAAGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtcttaaatccttcttcattgcatacgagtgttgttttgacgccgagttttgggaag
species | Selaginella moellendorffii |
transcript | EFJ09619 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTT CCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAAEST: gi|169035949|gb|FE442417.1|FE442417
genomic: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtctta ... ttttgggaagCCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAA
EST: CTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTT CCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAAEST: gi|169113522|gb|FE515057.1|FE515057
genomic: CTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtctta ... ttttgggaagCCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAA
EST: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTT CCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAAEST: gi|169052849|gb|FE461214.1|FE461214
genomic: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtctta ... ttttgggaagCCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAA
EST: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTT CCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTNAAAGCTCTTGAAEST: gi|169052850|gb|FE461215.1|FE461215
genomic: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtctta ... ttttgggaagCCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAA
EST: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTT CCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAAEST: gi|169043155|gb|FE454069.1|FE454069
genomic: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtctta ... ttttgggaagCCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAA
EST: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTT CCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAAEST: gi|169094267|gb|FE495545.1|FE495545
genomic: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtctta ... ttttgggaagCCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAA
EST: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTT CCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAAEST: gi|169043154|gb|FE454068.1|FE454068
genomic: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtctta ... ttttgggaagCCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAA
EST: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTT CCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAA
genomic: AGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtctta ... ttttgggaagCCTGTTCAAGATCCCAAGGGGATGACGTCGATCATAGTAAAAGCTCTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTTTTCTAGATCTTGCCAGAGATTATGAGCCCCATGCGGAACTCTCCAAGTGGCTGCAAGCAGGAGCAAAGCCAATTTACGTTGGTTTTGGAAGCCTTgtaagtcttaaatccttcttcattgcatacgagtgttgttttgacgccgagttttgggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG