1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGAAGTGCTTTCTATCGGGCATGCCTGATCTAAAGCTCGGGCTCAACGACAAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAGgtatgctttaaggtgtacattagtgcaacctttttgattgataaaaatttttcag
species | Selaginella moellendorffii |
transcript | EFJ25669 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAG TGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTTEST: gi|169070227|gb|FE479296.1|FE479296
genomic: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAGgtatgcttta ... aatttttcagTGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTT
EST: AAAATAGGACTTGAGAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAG TGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTTEST: gi|169073216|gb|FE481045.1|FE481045
genomic: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAGgtatgcttta ... aatttttcagTGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTT
EST: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAG TGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTTEST: gi|169050964|gb|FE458134.1|FE458134
genomic: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAGgtatgcttta ... aatttttcagTGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTT
EST: AAAATAGGACTTGAGAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAG TGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTTEST: gi|169109082|gb|FE511284.1|FE511284
genomic: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAGgtatgcttta ... aatttttcagTGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTT
EST: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAG TGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTTEST: gi|169050965|gb|FE458135.1|FE458135
genomic: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAGgtatgcttta ... aatttttcagTGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTT
EST: AAATAGGACTTGAGAAGGAAGCACAGGTGAAAGCGCGTCCCTGCAAAA-G TGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCEST: gi|169066974|gb|FE475964.1|FE475964
genomic: AAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCC-TGCAAAAAGgtatgcttta ... aatttttcagTGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTC
EST: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAG TGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTT
genomic: AAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAGgtatgcttta ... aatttttcagTGGGAAAACGATAGAGCTGGACGATGTCACGTTTCATCAGTGCGTCAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGTGCTTTCTATCGGGCATGCCTGATCTAAAGCTCGGGCTCAACGACAAAATAGGACTTGAAAAGGAAGCACAGGTGAAAGCGCGTCCTGCAAAAAGgtatgctttaaggtgtacattagtgcaacctttttgattgataaaaatttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA