1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGCCTGAAGACCTTTTTGAAACGATCTCACAAGCGCTGATCTCCTCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgctgattctttctcctcaccttcaagcatactgatcttatgcttatttttcttgtgtag
species | Selaginella moellendorffii |
transcript | EFJ32896 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGT GACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGAEST: gi|169101740|gb|FE501245.1|FE501245
genomic: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgc ... tcttgtgtagGACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
EST: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGT GACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGAEST: gi|169045729|gb|FE451702.1|FE451702
genomic: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgc ... tcttgtgtagGACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
EST: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGT GACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGCATGGATTAGGAEST: gi|169043818|gb|FE453809.1|FE453809
genomic: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgc ... tcttgtgtagGACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
EST: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGT GACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGAEST: gi|169049744|gb|FE457784.1|FE457784
genomic: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgc ... tcttgtgtagGACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
EST: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGT GACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGAEST: gi|169069806|gb|FE480305.1|FE480305
genomic: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgc ... tcttgtgtagGACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
EST: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGT GACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGCATGGATTAGGAEST: gi|70669820|gb|DN838397.1|DN838397
genomic: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgc ... tcttgtgtagGACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
EST: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGT GACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGAEST: gi|169045728|gb|FE451701.1|FE451701
genomic: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgc ... tcttgtgtagGACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
EST: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGT GACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGCATGGATTAGGAEST: gi|169043817|gb|FE453808.1|FE453808
genomic: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgc ... tcttgtgtagGACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
EST: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGT GACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
genomic: TCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgc ... tcttgtgtagGACCCCCGACCAGGTAATCGTAAGAACACTCAAAGGCCGGATGGATTAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCTGAAGACCTTTTTGAAACGATCTCACAAGCGCTGATCTCCTCGGTTGATCGTGACTGTCTGAGCGGCTGGGGAGGAATCGTCTACGTTGTgtaatagcgctgattctttctcctcaccttcaagcatactgatcttatgcttatttttcttgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA