1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGGAATGATCGTCGGAGGTTGGGACAAGCACGAGAAAGGTAGCATCTTCGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaagcgtgtttagaaattccagttcttatgccttccctctttcctgccag
species | Selaginella moellendorffii |
transcript | EFJ29444 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAG GCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAGEST: gi|169112679|gb|FE509452.1|FE509452
genomic: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaa ... ttcctgccagGCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAG
EST: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAG GCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAGEST: gi|169035552|gb|FE442943.1|FE442943
genomic: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaa ... ttcctgccagGCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAG
EST: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAG GCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAGEST: gi|169099232|gb|FE501550.1|FE501550
genomic: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaa ... ttcctgccagGCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAG
EST: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAG GCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAGEST: gi|169035551|gb|FE442942.1|FE442942
genomic: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaa ... ttcctgccagGCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAG
EST: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAG GCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAGEST: gi|169112680|gb|FE509453.1|FE509453
genomic: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaa ... ttcctgccagGCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAG
EST: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAG GCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAGEST: gi|169036817|gb|FE444960.1|FE444960
genomic: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaa ... ttcctgccagGCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAG
EST: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAG GCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAGEST: gi|169036818|gb|FE444961.1|FE444961
genomic: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaa ... ttcctgccagGCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAG
EST: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAG GCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAG
genomic: CGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaa ... ttcctgccagGCTCTGGATCGACCTATATATTTGGTTTTCTCGATCAAGCGTGGAGGCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGAATGATCGTCGGAGGTTGGGACAAGCACGAGAAAGGTAGCATCTTCGGTGTGCCAATCGGTGGAACTTTACTCCGCGTGCCTTTCACGATTGGAGgtaaatcgaagcgtgtttagaaattccagttcttatgccttccctctttcctgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG