1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGACATTGCGAGCTTTTACGAGGGTTACTACCTAAGCAAAGGTGTGAAGATAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaaaaggtcatcaagttatgtcttgacgggcaaattgcttgtgcag
species | Selaginella moellendorffii |
transcript | EFJ06061 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCAC GTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTGEST: gi|169066869|gb|FE473649.1|FE473649
genomic: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaa ... gcttgtgcagGTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
EST: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCAC GTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTGEST: gi|169054711|gb|FE460507.1|FE460507
genomic: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaa ... gcttgtgcagGTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
EST: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCAC GTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTGEST: gi|169050020|gb|FE458112.1|FE458112
genomic: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaa ... gcttgtgcagGTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
EST: AGTTAAAGGAACGG-TGCTTTCTGGTTTCGAGCTCGACGCGGAGGGTCAC GTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTGEST: gi|169055396|gb|FE463766.1|FE463766
genomic: AGTTAAAGGAACGGTTGC-TTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaa ... gcttgtgcagGTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
EST: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCAC GTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTGEST: gi|169098861|gb|FE502258.1|FE502258
genomic: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaa ... gcttgtgcagGTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
EST: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCAC GTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTGEST: gi|169041821|gb|FE449340.1|FE449340
genomic: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaa ... gcttgtgcagGTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
EST: ACGCGGAGGGTCAC GTTACAGCCGTGAAATTGAAGGATGAAAGGGAGTTGGCGGCGGACATTGTGEST: gi|169041822|gb|FE449341.1|FE449341
genomic: ACGCGGAGGGTCACgtaagtggaa ... gcttgtgcagGTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
EST: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCAC GTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTGEST: gi|169066650|gb|FE475432.1|FE475432
genomic: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaa ... gcttgtgcagGTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
EST: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCAC GTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
genomic: TAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaa ... gcttgtgcagGTTACAGCCGTGAAATTGAAGGATGGAAGGGAGTTGGCGGCGGACATTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACATTGCGAGCTTTTACGAGGGTTACTACCTAAGCAAAGGTGTGAAGATAGTTAAAGGAACGGTTGCTTCTGGTTTCGAGCTCGACGCGGAGGGTCACgtaagtggaaaaggtcatcaagttatgtcttgacgggcaaattgcttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA