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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTCCAAGCTTGCACCTTTTCGTATATTGAGCTTTGACATCGAATGTGCTGGGCGGAAAGGACATTTTCCAGAGCCCGAACATGATCCCGTTATTCAGgtgcgtatctttcatttgtttttcgattcaataagtggcgccattatgtag

Basic information

species Selaginella moellendorffii
transcript EFJ15982
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15982 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 6
GTACTCCAAGCTTGCACCTTTTCGTATATTGAGCTTTGACATCGAATGTGCTGGGCGGAAAGGACATTTTCCAGAGCCCGAACATGATCCCGTTATTCAGgtgcg-tatctttcatttgttt---ttcgattcaataagtggcgccattatgtag--------------------------
 || || ||| | || || ||||| || ||||| ||||||||||| |||||||| || ||||| |||||||| |||||    |||||||| ||||| ||||| |  | || |   |||  |    | | | |  |        |  ||| | |                            
ATATTCAAAGATGGCTCCGTTTCGCATTTTGAGTTTTGACATCGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGgtccactgtcctctcttttctcacctgcaaattcaagcacaatgttattgtttttgaactgaaaattctcttttcttacag

upper sequence: EFJ15982 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S54_271V6.1 (Physcomitrella patens), 5'ss of exon 6
GTACTCCAAGCTTGCACCTTTTCGTATATTGAGCTTTGACATCGAATGTGCTGGGCGGAAAGGACATTTTCCAGAGCCCGAACATGATCCCGTTATTCAGgtgcgtatctttcatttgtttttcgattcaataagtggcgccattatgtag-------------------------------------------------
 ||||| ||| | || || ||||| ||  | ||||||||||| || ||||||||| | ||||| ||||| |||||||| || |||||||| || ||||||||  ||  |     ||   |||    |   |     ||    |  | |||                                                  
ATACTCGAAGATGGCCCCGTTTCGGATTCTAAGCTTTGACATTGAGTGTGCTGGGAGAAAAGGTCATTTCCCAGAGCCAGAGCATGATCCTGTCATTCAGgtaagttcccagacttgaatttaacgtctcacgctgggttggaggaagtaagctagtgttgtgtttcagtcgttgtaatggcatgtcgtatgggacatgt

upper sequence: EFJ15982 (Selaginella moellendorffii), 5'ss of exon 5
lower sequence: PP1S14_182V6.1 (Physcomitrella patens), 5'ss of exon 6
GTACTCCAAGCTTGCACCTTTTCGTATATTGAGCTTTGACATCGAATGTGCTGGGCGGAAAGGACATTTTCCAGAGCCCGAACATGATCCCGTTATTCAGgtgcgt-----atctttcatttgtttt-------tcgattcaataagtggcg-ccattatgtag------------------------------------
 || || ||| | || || ||||| || || |||||||| ||||| ||||| ||| | ||||| ||||||||||| || || |||||||| || ||||||||   |     | |||| || ||   |          |||    ||| | |   ||||     |                                    
ATATTCAAAGATGGCCCCGTTTCGAATTTTAAGCTTTGATATCGAGTGTGCAGGGAGAAAAGGCCATTTTCCAGAACCAGAGCATGATCCTGTCATTCAGgtaaatttcaaagctttaatgtgagctagaagctcttatttggaaagcgtcaatcattggacggaaatctattacaatttcacttaactcttggcgtttg