1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGACTGGAGGCTCGACGACATCAAAGGCCTGCTTGGAAAGTGCAACTTCAAGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtgctttttaccagtttgttccgccattaatacttccttgacag
species | Selaginella moellendorffii |
transcript | EFJ10635 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169026960|gb|FE434272.1|FE434272
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169028378|gb|FE439897.1|FE439897
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169052592|gb|FE461659.1|FE461659
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169036614|gb|FE444159.1|FE444159
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169054986|gb|FE462927.1|FE462927
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169078769|gb|FE489619.1|FE489619
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169105691|gb|FE508457.1|FE508457
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169027273|gb|FE436145.1|FE436145
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169026779|gb|FE436353.1|FE436353
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169116429|gb|FE518195.1|FE518195
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169080652|gb|FE487173.1|FE487173
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: CTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169087542|gb|FE494633.1|FE494633
genomic: CTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169056802|gb|FE465405.1|FE465405
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169027733|gb|FE433219.1|FE433219
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTAEST: gi|169075650|gb|FE482036.1|FE482036
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
EST: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAG GCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
genomic: AGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtg ... tccttgacagGCTCGGTTGGCATTTTGCAAATTCATGGTCAAGCCTTCGACTTTGCTCGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACTGGAGGCTCGACGACATCAAAGGCCTGCTTGGAAAGTGCAACTTCAAGGCTGAGATGTTTCCCAGGAAAGCGGCCTTTTTGAGTGGAGGCGAAAAGgtgacaagtgctttttaccagtttgttccgccattaatacttccttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG