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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTTgtaagtaccgagcttcccatccgcgattctagcagtacaaacttgtggatcgctttcgttttag

Basic information

species Selaginella moellendorffii
transcript EFJ30923
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30923 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S80_153V6.1 (Physcomitrella patens), 5'ss of exon 4
CTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTTgtaag---------taccgagcttc--ccatccgcgattctagcagtaca-aact-tgtggatcgctttcgttttag-----------------------
 |||||||| ||||||||||| ||||| |||||||| |||||  ||||||| |||||||||||||| || ||||| |||||||| || ||  | ||||          |||| |  |     | | || ||||| || |   || |||| | |  |||  | |  |   |                        
GTTTGGAACAGATTTTGCTGCGATTGCTAAGTTCGTGGGGACTCGAAGCTCAACTCAAGTTCGCACACATGCGCAAAAATACTATGCAAAGTTGgtaaagttatcttttaccaatgtaggatccttcgtgattccagaacctcataactatattcatcaatgtgatgcaacatctaaagcaatgataatagttc

upper sequence: EFJ30923 (Selaginella moellendorffii), 5'ss of exon 4
lower sequence: PP1S87_134V6.1 (Physcomitrella patens), 5'ss of exon 4
CTTTGGAACCGATTTTGCTGCCATTGCAAAGTTCGTCGGGACGAGAAGCTCCACTCAAGTTCGCACTCACGCGCAGAAATACTACGCCAAACTTgtaagt---accgagcttcccatccgcgattctagcagtacaaacttgtggatcgctttcgttttag---------------------------------
 |||||||| ||||||||||| ||||| |||||||| || ||  | || ||||| |||||||||||||| ||||| ||||||||||| ||  | ||| ||    | |  |     |       || | ||   |||  | | |   |      |||  |||                                 
ATTTGGAACAGATTTTGCTGCTATTGCCAAGTTCGTAGGCACACGCAGTTCCACCCAAGTTCGCACTCATGCGCAAAAATACTACGCGAAGTTGgtatgttatcctgtacgcttgaagtatctttattgcttgacagccgtatcattaaaagacgtagtagtagctgtctaaatggtatgagtgtaagcaggtg