1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGCCCCGGAAGACTCACAGGGGTCTACGAAAGGTTGCATGTATCGGAGCGTGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttcacagttggttctctcggattgtcctaaactttgttctatattgtcgcag
species | Selaginella moellendorffii |
transcript | EFJ30452 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGCATCCAGCTCGCGTTTCGTTCACGGTTGCCAGGGGCGGTCAGAACGG ATACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCCEST: gi|169115638|gb|FE517848.1|FE517848
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
EST: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGG TTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCAEST: gi|169115637|gb|FE517847.1|FE517847
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
EST: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGG TTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCAEST: gi|169063851|gb|FE471206.1|FE471206
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
EST: TGGCATCCAGCTCGCGTTTCGTTCACGGTTGCCAGGGCCGGTCAGAACGG ATACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCAEST: gi|169105156|gb|FE504828.1|FE504828
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
EST: TGGCATCCAGCTCGCGTTTCGTTCACGGTTGCCAGGGCCGGTCAGAACGG ATACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCAEST: gi|169074640|gb|FE481195.1|FE481195
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
EST: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGG TTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCAEST: gi|169105157|gb|FE504829.1|FE504829
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
EST: TGGCATCCAGCTCGCGTTTCGTTCACGGTTGCCAGGGCCGGTCAGAACGG ATACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCAEST: gi|169062674|gb|FE470344.1|FE470344
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
EST: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGG TTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCAEST: gi|169054886|gb|FE463490.1|FE463490
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
EST: TGGCATCCAGCTCGCGTTTCGTTCACGGTTGCCAGGGCCGGTCAGAACGG ATACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCAEST: gi|169099959|gb|FE503447.1|FE503447
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
EST: TGGCATCCAGCTCGCGTTTCGTTCACGGTTGCCAGGGCCGGTCAGAACGG ATACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
genomic: TGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttc ... attgtcgcagTTACCATCACCGTACCGAGATGAACAAGAAGATCTACAAGATCGGCAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCCCCGGAAGACTCACAGGGGTCTACGAAAGGTTGCATGTATCGGAGCGTGGCATCCAGCTCGCGTTTCCTTCACGGTTGCCAGGGCCGGTCAGAACGGgtaagttttcacagttggttctctcggattgtcctaaactttgttctatattgtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC