1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAGgtgaatctcgcatttctgcaattcctgaaactctgtttgcgtgcttgcattgaaagccttccatttgagagccctgtcccagagaaactgagagaatttt...
species | Selaginella moellendorffii |
transcript | EFJ31563 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAG TTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTTEST: gi|169036220|gb|FE445689.1|FE445689
genomic: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAGgtgaatctcg ... gacgtagtagTTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTT
EST: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAG TTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTTEST: gi|169061695|gb|FE469885.1|FE469885
genomic: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAGgtgaatctcg ... gacgtagtagTTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTT
EST: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAG TTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTT
genomic: AGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAGgtgaatctcg ... gacgtagtagTTTCGGGCGCTCTCGGATCAGTTTTATAGAACACCAGATCATCACATGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCAGGTCTATGGATTGACAGAGCACAAGATTCCTGGCGATGGTAACTGTCAGgtgaatctcgcatttctgcaattcctgaaactctgtttgcgtgcttgcattgaaagccttccatttgagagccctgtcccagagaaactgagagaatttt
- - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgtcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agagaat