1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAGAAGTATGACACCGACGAAGGAAAGAAGGGCATCGAACACGAACTGGAGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaactctcgatccagaaacaattgactcgtgctaatgtttgagaactatctccag
species | Selaginella moellendorffii |
transcript | EFJ30452 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGAGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|169115638|gb|FE517848.1|FE517848
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|169115637|gb|FE517847.1|FE517847
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|169062675|gb|FE470345.1|FE470345
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|169099960|gb|FE503448.1|FE503448
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGAGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|70670339|gb|DN838916.1|DN838916
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGAGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|169074640|gb|FE481195.1|FE481195
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: GTGATCCGCGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|169074641|gb|FE481196.1|FE481196
genomic: GTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|169054886|gb|FE463490.1|FE463490
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: GTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|169036555|gb|FE444126.1|FE444126
genomic: GTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGAGTCCTCGCTCACACCAGG GTTCGCAACCCTCA-GGGCATCAAGCEST: gi|169054887|gb|FE463491.1|FE463491
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACC-TCAAGGGCATCAAGC
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGAGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATTEST: gi|169063852|gb|FE471207.1|FE471207
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
EST: AGCGTATGAAGAAGTACGGCTCTGTGATCCGAGTCCTCGCTCACACCAAG GTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
genomic: AGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaac ... ctatctccagGTTCGCAACCTCAAGGGCATCAAGCAGAAGAAGGCCCATCTCATGGAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGAAGTATGACACCGACGAAGGAAAGAAGGGCATCGAACACGAACTGGAGCGTATGAAGAAGTACGGCTCTGTGATCCGCGTCCTCGCTCACACCAAGgtatgaaaactctcgatccagaaacaattgactcgtgctaatgtttgagaactatctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT